Variant report

Variant	rs2154652
Chromosome Location	chr8:102768067-102768068
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102767254..102769678-chr8:102771935..102774760,3	MCF-7	breast:
2	chr8:102748697..102751246-chr8:102767515..102769264,2	MCF-7	breast:
3	chr8:102756631..102759925-chr8:102765539..102768574,3	MCF-7	breast:
4	chr8:102755506..102757856-chr8:102767711..102770517,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10091905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10094868	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10094894	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10113785	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10216921	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10505012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1073373	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs1074703	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1077500	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1077998	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10808377	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10808378	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10808379	0.84[CEU][hapmap]
rs10955274	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955275	1.00[EUR][1000 genomes]
rs1111884	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1111886	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1125334	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1125335	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11782123	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs12334693	0.84[CEU][hapmap]
rs12543380	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12545537	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12550570	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1264933	0.83[CEU][hapmap]
rs12677525	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs13251735	0.83[CEU][hapmap]
rs13252722	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13265954	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13267715	0.88[EUR][1000 genomes]
rs13268186	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13281055	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13281871	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13282456	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1465167	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1557336	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1573284	0.96[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17406994	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs1893366	0.83[CEU][hapmap]
rs2004556	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2032121	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2155942	0.83[CEU][hapmap]
rs2186392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2186393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212701	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2387616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2387617	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2387618	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2387619	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28837777	0.81[EUR][1000 genomes]
rs2892324	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs4379418	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4493882	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576401	0.81[EUR][1000 genomes]
rs4734040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734593	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4734594	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4734595	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4734597	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6468792	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6468793	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs6468794	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6468795	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs6468796	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6468798	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6468799	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6987380	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6988793	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6997574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000357	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7001437	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7002547	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7003041	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7008826	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7009385	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7011941	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7012512	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs7013506	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7015311	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs7017754	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7812876	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7813132	0.81[CEU][hapmap]
rs7827691	0.84[CEU][hapmap]
rs7830291	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7835223	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7835485	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs7838696	0.84[CEU][hapmap]
rs7844259	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7844292	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7844599	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8181022	0.84[CEU][hapmap]
rs8181025	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9297313	0.84[CEU][hapmap]
rs9693504	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9693531	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431444	chr8:102766776-102770974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
5	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
6	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
7	chr8:102761400-102781000	Weak transcription	Liver	Liver
8	chr8:102763200-102768400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:102763200-102768400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:102764200-102768400	Weak transcription	Lung	lung
11	chr8:102764400-102768200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:102765000-102770400	Weak transcription	Ovary	ovary
13	chr8:102765400-102770000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:102765600-102769200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:102765800-102768800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr8:102767600-102768400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:102767600-102769000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:102767600-102769200	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr8:102767600-102769600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:102767800-102769000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:102768000-102768800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:102768000-102768800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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