Variant report

Variant	rs6468792
Chromosome Location	chr8:102756851-102756852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102756631..102759925-chr8:102765539..102768574,3	MCF-7	breast:
2	chr8:102755506..102757856-chr8:102767711..102770517,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10091905	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10094868	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs10094894	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10113785	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10216921	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10505012	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1073373	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1074703	0.85[AMR][1000 genomes]
rs1077500	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1077998	0.95[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808377	0.86[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10808378	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs10955274	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10955275	0.95[EUR][1000 genomes]
rs1111884	0.96[CEU][hapmap]
rs1111886	0.92[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs1125334	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1125335	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11782123	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs12543380	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12545537	0.96[CEU][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs12550570	0.96[CEU][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12677525	0.92[CEU][hapmap]
rs13252722	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13265954	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267715	0.86[EUR][1000 genomes]
rs13268186	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13281055	0.95[CEU][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13281871	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13282456	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1465167	0.96[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1557336	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1573284	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17406994	0.91[CEU][hapmap]
rs2004556	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2032121	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2154652	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2186392	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2186393	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2212701	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2387616	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2387617	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2387618	0.96[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2387619	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2892324	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs4379418	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4493882	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734040	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734593	0.96[CEU][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs4734594	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4734595	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4734597	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6468793	0.92[CEU][hapmap]
rs6468794	0.92[CEU][hapmap]
rs6468795	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs6468796	0.92[CEU][hapmap]
rs6468798	0.92[CEU][hapmap]
rs6468799	0.92[CEU][hapmap]
rs6987380	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988793	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs6997574	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000357	0.84[CEU][hapmap]
rs7001437	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7002547	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7003041	0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7008826	0.96[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs7009385	0.96[CEU][hapmap];0.82[CHD][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7011941	0.84[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs7012512	0.91[CEU][hapmap]
rs7013506	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7015311	0.92[CEU][hapmap]
rs7017754	0.92[CEU][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7812876	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7830291	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7835223	0.84[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes]
rs7835485	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7844259	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7844292	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7844599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8181025	0.84[CEU][hapmap];0.82[AMR][1000 genomes]
rs9693504	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9693531	0.96[CEU][hapmap];0.95[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6468792	NCALD	cis	parietal	SCAN
rs6468792	ZNF706	cis	cerebellum	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102732000-102762400	Weak transcription	Lung	lung
3	chr8:102735000-102760600	Weak transcription	Liver	Liver
4	chr8:102735400-102757800	Weak transcription	Fetal Stomach	stomach
5	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:102735800-102759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:102742200-102759200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:102743800-102761800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:102746400-102758000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:102746600-102763800	Weak transcription	Left Ventricle	heart
13	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
14	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
15	chr8:102750200-102757600	Weak transcription	Ovary	ovary
16	chr8:102750400-102757600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:102751200-102757000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:102753400-102761800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:102755800-102758000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr8:102756000-102757200	Genic enhancers	Fetal Muscle Leg	muscle
21	chr8:102756000-102758000	Enhancers	Psoas Muscle	Psoas
22	chr8:102756000-102762000	Weak transcription	Adipose Nuclei	Adipose
23	chr8:102756200-102757000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr8:102756200-102763200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
26	chr8:102756600-102757200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:102756600-102758400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:102756600-102758400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr8:102756600-102759400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:102756800-102757000	Enhancers	Brain Anterior Caudate	brain
31	chr8:102756800-102757000	Enhancers	Fetal Brain Female	brain
32	chr8:102756800-102757200	Enhancers	GM12878-XiMat	blood

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