Variant report

Variant	rs6988793
Chromosome Location	chr8:102781721-102781722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102778531..102781884-chr8:102783366..102786443,4	K562	blood:
2	chr8:102778531..102781884-chr8:102783366..102786443,5	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10091905	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10094868	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10094894	0.96[EUR][1000 genomes]
rs10113785	0.94[EUR][1000 genomes]
rs10216921	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10505012	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1073373	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs1074703	0.84[EUR][1000 genomes]
rs1077500	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1077998	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10808377	1.00[CEU][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs10808378	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10808379	0.83[CEU][hapmap]
rs10955274	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs10955275	0.96[EUR][1000 genomes]
rs1111884	1.00[CEU][hapmap]
rs1111886	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1125334	0.96[CEU][hapmap];0.84[GIH][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs1125335	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs11782123	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs12334693	0.83[CEU][hapmap]
rs12543380	0.95[EUR][1000 genomes]
rs12545537	1.00[CEU][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs12550570	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1264931	0.86[MEX][hapmap]
rs1264933	0.83[CEU][hapmap]
rs12677525	0.96[CEU][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs13251735	0.83[CEU][hapmap];0.87[CHD][hapmap];0.82[TSI][hapmap]
rs13252722	0.91[EUR][1000 genomes]
rs13265954	0.94[EUR][1000 genomes]
rs13267715	0.84[EUR][1000 genomes]
rs13268186	1.00[CEU][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13281055	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13281871	0.94[EUR][1000 genomes]
rs13282456	0.94[EUR][1000 genomes]
rs1465167	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs1557336	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1573284	0.96[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.88[EUR][1000 genomes]
rs17406994	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1893366	0.83[CEU][hapmap]
rs2004556	0.91[EUR][1000 genomes]
rs2032121	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2154652	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2155939	0.86[MEX][hapmap]
rs2155942	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs2186392	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2186393	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2212701	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2387616	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2387617	0.96[EUR][1000 genomes]
rs2387618	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes]
rs2387619	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes]
rs28837777	0.84[EUR][1000 genomes]
rs2892324	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs4379418	0.96[EUR][1000 genomes]
rs4493882	0.96[EUR][1000 genomes]
rs4576401	0.84[EUR][1000 genomes]
rs4734040	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4734593	1.00[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs4734594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734595	0.96[CEU][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs4734597	0.88[EUR][1000 genomes]
rs6468792	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs6468793	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6468794	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6468795	0.96[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs6468796	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6468798	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs6468799	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6468801	0.84[CHD][hapmap]
rs6987380	0.96[CEU][hapmap];0.81[GIH][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs6991592	0.82[MEX][hapmap]
rs6997574	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7000357	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs7001437	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7002547	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs7008826	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs7009385	1.00[CEU][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs7011941	0.88[CEU][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs7012512	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs7013506	0.91[EUR][1000 genomes]
rs7015311	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7017754	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7812876	0.88[EUR][1000 genomes]
rs7813132	0.81[CEU][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap]
rs7827691	0.83[CEU][hapmap]
rs7827941	0.81[CHD][hapmap]
rs7830291	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs7835223	0.88[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs7835485	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7838696	0.83[CEU][hapmap]
rs7844259	0.81[EUR][1000 genomes]
rs7844599	0.95[CEU][hapmap];0.80[CHB][hapmap];0.87[EUR][1000 genomes]
rs8181022	0.83[CEU][hapmap]
rs8181025	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs9297313	0.83[CEU][hapmap]
rs9693504	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9693531	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6988793	NCALD	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102770600-102786800	Weak transcription	Esophagus	oesophagus
3	chr8:102772800-102783400	Weak transcription	Aorta	Aorta
4	chr8:102772800-102786800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:102774200-102782000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:102774200-102782200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:102774200-102782200	Weak transcription	Brain Anterior Caudate	brain
8	chr8:102774200-102782600	Weak transcription	Fetal Kidney	kidney
9	chr8:102774200-102790200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:102774600-102799600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:102777200-102785200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:102777400-102782800	Weak transcription	Psoas Muscle	Psoas
13	chr8:102777600-102782600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr8:102777600-102798000	Weak transcription	Fetal Stomach	stomach
15	chr8:102778000-102782000	Weak transcription	Brain Substantia Nigra	brain
16	chr8:102778000-102782000	Weak transcription	Fetal Brain Female	brain
17	chr8:102778000-102782000	Weak transcription	Left Ventricle	heart
18	chr8:102778000-102782200	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:102778000-102783400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:102778200-102781800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:102778200-102782000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr8:102778200-102782800	Weak transcription	Right Atrium	heart
23	chr8:102778200-102782800	Weak transcription	Right Ventricle	heart
24	chr8:102778200-102786800	Weak transcription	Brain Angular Gyrus	brain
25	chr8:102778400-102781800	Weak transcription	Fetal Brain Male	brain
26	chr8:102778400-102782800	Weak transcription	Ovary	ovary
27	chr8:102780200-102782000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:102780200-102782000	Weak transcription	Fetal Muscle Leg	muscle
29	chr8:102780200-102799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:102780600-102785600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr8:102781000-102781800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:102781400-102782800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:102781600-102781800	Enhancers	Brain Germinal Matrix	brain
34	chr8:102781600-102782000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:102781600-102782200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:102781600-102782800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr8:102781600-102783600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:102781600-102783800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr8:102781600-102801000	Weak transcription	Liver	Liver

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