Variant report

Variant	rs28837777
Chromosome Location	chr8:102811583-102811584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102805837..102808016-chr8:102809484..102812938,3	MCF-7	breast:
2	chr8:102808642..102810745-chr8:102811449..102813834,3	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10091905	0.81[EUR][1000 genomes]
rs10094868	0.81[EUR][1000 genomes]
rs10094894	0.81[EUR][1000 genomes]
rs10113785	0.81[EUR][1000 genomes]
rs10216921	0.81[EUR][1000 genomes]
rs10505012	0.80[EUR][1000 genomes]
rs1073373	0.89[EUR][1000 genomes]
rs1077500	0.89[EUR][1000 genomes]
rs1077998	0.84[EUR][1000 genomes]
rs10808377	0.81[EUR][1000 genomes]
rs10808378	0.81[EUR][1000 genomes]
rs10808379	0.87[EUR][1000 genomes]
rs10955274	0.88[EUR][1000 genomes]
rs10955275	0.81[EUR][1000 genomes]
rs1111886	0.91[EUR][1000 genomes]
rs11782123	0.88[EUR][1000 genomes]
rs12334693	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12543380	0.80[EUR][1000 genomes]
rs12544026	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12545537	0.81[EUR][1000 genomes]
rs12550570	0.80[EUR][1000 genomes]
rs12677525	0.99[EUR][1000 genomes]
rs13251735	0.85[EUR][1000 genomes]
rs13255004	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13265954	0.81[EUR][1000 genomes]
rs13267715	0.91[EUR][1000 genomes]
rs13268186	0.84[EUR][1000 genomes]
rs13281055	0.80[EUR][1000 genomes]
rs13281871	0.81[EUR][1000 genomes]
rs13282456	0.81[EUR][1000 genomes]
rs1465167	0.89[EUR][1000 genomes]
rs1557336	0.91[EUR][1000 genomes]
rs1573284	0.80[EUR][1000 genomes]
rs17406994	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1893366	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2004556	0.84[EUR][1000 genomes]
rs2032121	0.80[EUR][1000 genomes]
rs2154652	0.81[EUR][1000 genomes]
rs2155943	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2186392	0.81[EUR][1000 genomes]
rs2186393	0.81[EUR][1000 genomes]
rs2212701	0.89[EUR][1000 genomes]
rs2226724	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2226725	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2387616	0.81[EUR][1000 genomes]
rs2387617	0.81[EUR][1000 genomes]
rs2387618	0.84[EUR][1000 genomes]
rs2387619	0.84[EUR][1000 genomes]
rs2892324	0.91[EUR][1000 genomes]
rs4379418	0.81[EUR][1000 genomes]
rs4493882	0.81[EUR][1000 genomes]
rs4576401	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734040	0.81[EUR][1000 genomes]
rs4734593	0.83[EUR][1000 genomes]
rs4734594	0.84[EUR][1000 genomes]
rs4734595	0.94[EUR][1000 genomes]
rs4734596	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734597	0.82[EUR][1000 genomes]
rs6468793	0.99[EUR][1000 genomes]
rs6468794	1.00[EUR][1000 genomes]
rs6468795	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6468796	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6468798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6468799	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6468801	0.85[EUR][1000 genomes]
rs6984260	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6988793	0.84[EUR][1000 genomes]
rs6993577	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6997574	0.81[EUR][1000 genomes]
rs7001437	0.80[EUR][1000 genomes]
rs7008826	0.87[EUR][1000 genomes]
rs7009385	0.89[EUR][1000 genomes]
rs7012512	1.00[EUR][1000 genomes]
rs7015311	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7017754	0.88[EUR][1000 genomes]
rs7812876	0.80[EUR][1000 genomes]
rs7813132	0.81[EUR][1000 genomes]
rs7827304	0.81[EUR][1000 genomes]
rs7827691	0.83[EUR][1000 genomes]
rs7827941	0.81[EUR][1000 genomes]
rs7830291	0.89[EUR][1000 genomes]
rs7835485	0.88[EUR][1000 genomes]
rs7838696	0.89[EUR][1000 genomes]
rs8181022	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9693504	0.80[EUR][1000 genomes]
rs9693531	0.81[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803200-102817800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links