Variant report

Variant	rs12543380
Chromosome Location	chr8:102764057-102764058
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102762167..102765606-chr8:102768748..102771183,3	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10091905	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094868	0.99[EUR][1000 genomes]
rs10094894	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113785	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10216921	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505012	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073373	0.88[EUR][1000 genomes]
rs1074703	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1077500	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1077998	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808377	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808378	0.99[EUR][1000 genomes]
rs10955274	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10955275	0.99[EUR][1000 genomes]
rs1111884	0.83[EUR][1000 genomes]
rs1111886	0.89[EUR][1000 genomes]
rs1125334	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1125335	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11782123	0.92[EUR][1000 genomes]
rs12545537	0.99[EUR][1000 genomes]
rs12550570	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677525	0.81[EUR][1000 genomes]
rs13252722	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13265954	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13267715	0.89[EUR][1000 genomes]
rs13268186	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13281055	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13281871	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13282456	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1465167	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1557336	0.88[EUR][1000 genomes]
rs1573284	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17406994	0.80[EUR][1000 genomes]
rs2004556	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2032121	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154652	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2186392	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2186393	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2212701	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2387616	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2387617	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2387618	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2387619	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28837777	0.80[EUR][1000 genomes]
rs2892324	0.89[EUR][1000 genomes]
rs4379418	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4493882	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4576401	0.80[EUR][1000 genomes]
rs4734040	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734593	0.94[EUR][1000 genomes]
rs4734594	0.95[EUR][1000 genomes]
rs4734595	0.84[EUR][1000 genomes]
rs4734597	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6468792	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6468793	0.81[EUR][1000 genomes]
rs6468794	0.80[EUR][1000 genomes]
rs6468795	0.84[EUR][1000 genomes]
rs6468796	0.80[EUR][1000 genomes]
rs6468799	0.80[EUR][1000 genomes]
rs6987380	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988793	0.95[EUR][1000 genomes]
rs6997574	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7000357	0.81[EUR][1000 genomes]
rs7001437	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002547	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7003041	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7008826	0.85[EUR][1000 genomes]
rs7009385	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7011941	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7012512	0.80[EUR][1000 genomes]
rs7013506	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7015311	0.80[EUR][1000 genomes]
rs7017754	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7812876	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7830291	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7835223	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7835485	0.92[EUR][1000 genomes]
rs7844259	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7844292	0.88[ASN][1000 genomes]
rs7844599	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8181025	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9693504	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693531	0.99[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
6	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
7	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
8	chr8:102757200-102764400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:102759800-102767800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:102761400-102781000	Weak transcription	Liver	Liver
11	chr8:102763000-102764200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:102763200-102764600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:102763200-102766800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:102763200-102768400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:102763200-102768400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:102763400-102764400	Enhancers	Ovary	ovary
17	chr8:102763400-102764600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:102763400-102765200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:102763600-102764400	Enhancers	Adipose Nuclei	Adipose
20	chr8:102763600-102767600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:102763800-102764200	Enhancers	Fetal Muscle Trunk	muscle
22	chr8:102763800-102764200	Genic enhancers	Fetal Muscle Leg	muscle
23	chr8:102763800-102764200	Enhancers	Left Ventricle	heart
24	chr8:102763800-102764200	Enhancers	Lung	lung
25	chr8:102763800-102764200	Enhancers	HUVEC	blood vessel
26	chr8:102763800-102764400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:102763800-102764600	Enhancers	HSMM	muscle
28	chr8:102763800-102765000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:102764000-102764600	Enhancers	HSMMtube	muscle

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