Variant report

Variant	rs7000357
Chromosome Location	chr8:102829515-102829516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10091905	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10094868	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10094894	0.82[EUR][1000 genomes]
rs10113785	0.81[EUR][1000 genomes]
rs10216921	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10505012	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1073373	0.84[CEU][hapmap]
rs1074703	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1077500	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1077998	0.87[CEU][hapmap]
rs10808377	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10808378	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10808379	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10955274	0.84[CEU][hapmap]
rs10955275	0.82[EUR][1000 genomes]
rs1111884	0.88[CEU][hapmap]
rs1111886	0.84[CEU][hapmap]
rs1125334	0.84[CEU][hapmap]
rs11782123	0.84[CEU][hapmap]
rs12334693	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs12543380	0.81[EUR][1000 genomes]
rs12545537	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs12550570	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1264930	0.84[CEU][hapmap]
rs1264933	0.96[CEU][hapmap]
rs12677525	0.84[CEU][hapmap]
rs13251735	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13255004	0.88[EUR][1000 genomes]
rs13265954	0.81[EUR][1000 genomes]
rs13268186	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13281055	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs13281871	0.81[EUR][1000 genomes]
rs13282456	0.81[EUR][1000 genomes]
rs1465167	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1557336	0.84[CEU][hapmap]
rs1573284	0.84[CEU][hapmap]
rs17406994	0.84[CEU][hapmap]
rs1893366	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2032121	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2154652	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2155938	0.84[CEU][hapmap]
rs2155942	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155943	0.86[EUR][1000 genomes]
rs2186392	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2186393	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2212701	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2226724	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2226725	0.89[EUR][1000 genomes]
rs2387616	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2387617	0.82[EUR][1000 genomes]
rs2387618	0.88[CEU][hapmap]
rs2387619	0.88[CEU][hapmap]
rs2892324	0.82[CEU][hapmap]
rs4379418	0.82[EUR][1000 genomes]
rs4493882	0.82[EUR][1000 genomes]
rs4734040	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4734593	0.88[CEU][hapmap]
rs4734594	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs4734595	0.84[CEU][hapmap]
rs4734596	0.81[EUR][1000 genomes]
rs4734597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6468792	0.84[CEU][hapmap]
rs6468793	0.84[CEU][hapmap]
rs6468794	0.84[CEU][hapmap]
rs6468795	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs6468796	0.84[CEU][hapmap]
rs6468798	0.84[CEU][hapmap]
rs6468799	0.84[CEU][hapmap]
rs6468801	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6984260	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs6987380	0.84[CEU][hapmap]
rs6988793	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs6993577	0.88[EUR][1000 genomes]
rs6997574	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7001437	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7002547	0.83[CEU][hapmap]
rs7009385	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7011941	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7012512	0.83[CEU][hapmap]
rs7015311	0.84[CEU][hapmap]
rs7017754	0.84[CEU][hapmap]
rs7813132	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7827304	0.89[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7827691	0.96[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7827941	0.84[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7828175	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs7828516	0.80[CEU][hapmap]
rs7830291	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7835223	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7835485	0.84[CEU][hapmap]
rs7838696	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7844599	0.83[CEU][hapmap]
rs8181022	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs8181025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297313	0.96[CEU][hapmap]
rs9693504	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs9693531	0.88[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102828200-102829800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:102828400-102832600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102829000-102829600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102829000-102829800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:102829000-102829800	Enhancers	Brain Cingulate Gyrus	brain
7	chr8:102829000-102830800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:102829200-102829600	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr8:102829400-102829600	Flanking Active TSS	Brain Angular Gyrus	brain
10	chr8:102829400-102829600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr8:102829400-102829600	Weak transcription	Brain Substantia Nigra	brain
12	chr8:102829400-102830200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr8:102829400-102830200	Enhancers	Brain Germinal Matrix	brain
14	chr8:102829400-102830200	Active TSS	Brain Hippocampus Middle	brain
15	chr8:102829400-102830800	Enhancers	Aorta	Aorta
16	chr8:102829400-102830800	Enhancers	Fetal Muscle Leg	muscle
17	chr8:102829400-102830800	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links