Variant report

Variant	rs13255004
Chromosome Location	chr8:102832405-102832406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1074703	0.82[EUR][1000 genomes]
rs10808379	0.99[EUR][1000 genomes]
rs12334693	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12544026	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12677525	0.88[EUR][1000 genomes]
rs13251735	0.96[EUR][1000 genomes]
rs17406994	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1893366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155942	0.84[EUR][1000 genomes]
rs2155943	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2226724	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2226725	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28837777	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4576401	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4734595	0.83[EUR][1000 genomes]
rs4734596	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4734597	0.85[EUR][1000 genomes]
rs6468793	0.88[EUR][1000 genomes]
rs6468794	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6468795	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6468796	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6468798	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6468799	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6468801	0.96[EUR][1000 genomes]
rs6984260	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6993577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000357	0.88[EUR][1000 genomes]
rs7011941	0.88[EUR][1000 genomes]
rs7012512	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7015311	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7813132	0.92[EUR][1000 genomes]
rs7827304	0.92[EUR][1000 genomes]
rs7827691	0.95[EUR][1000 genomes]
rs7827941	0.92[EUR][1000 genomes]
rs7835223	0.89[EUR][1000 genomes]
rs7838696	0.99[EUR][1000 genomes]
rs8181022	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8181025	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102828400-102832600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:102829600-102834600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102830200-102834800	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:102830200-102835400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:102830200-102836400	Weak transcription	Brain Angular Gyrus	brain
7	chr8:102830600-102835800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:102830800-102833600	Weak transcription	Aorta	Aorta
9	chr8:102830800-102834600	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:102830800-102834600	Weak transcription	Ovary	ovary
11	chr8:102830800-102835800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:102831800-102832600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:102832000-102835600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:102832200-102832600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:102832200-102833600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:102832200-102843800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:102832400-102836000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links