Variant report

Variant	rs13282456
Chromosome Location	chr8:102759230-102759231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102756631..102759925-chr8:102765539..102768574,3	MCF-7	breast:
2	chr8:102759103..102761260-chr8:102764517..102767172,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10091905	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10094868	0.99[EUR][1000 genomes]
rs10094894	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10113785	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216921	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10505012	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1073373	0.88[EUR][1000 genomes]
rs1074703	0.83[AMR][1000 genomes]
rs1077500	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1077998	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808377	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808378	0.99[EUR][1000 genomes]
rs10955274	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10955275	0.99[EUR][1000 genomes]
rs1111884	0.82[EUR][1000 genomes]
rs1111886	0.90[EUR][1000 genomes]
rs1125334	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1125335	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782123	0.91[EUR][1000 genomes]
rs12543380	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12545537	0.99[EUR][1000 genomes]
rs12550570	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12677525	0.82[EUR][1000 genomes]
rs13252722	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265954	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13267715	0.90[EUR][1000 genomes]
rs13268186	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13281055	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13281871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1465167	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1557336	0.88[EUR][1000 genomes]
rs1573284	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17406994	0.81[EUR][1000 genomes]
rs2004556	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2032121	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2154652	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2186392	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2186393	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2212701	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2387616	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2387617	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2387618	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2387619	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28837777	0.81[EUR][1000 genomes]
rs2892324	0.90[EUR][1000 genomes]
rs4379418	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4493882	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4576401	0.81[EUR][1000 genomes]
rs4734040	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734593	0.95[EUR][1000 genomes]
rs4734594	0.94[EUR][1000 genomes]
rs4734595	0.85[EUR][1000 genomes]
rs4734597	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6468792	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6468793	0.82[EUR][1000 genomes]
rs6468794	0.81[EUR][1000 genomes]
rs6468795	0.83[EUR][1000 genomes]
rs6468796	0.81[EUR][1000 genomes]
rs6468798	0.80[EUR][1000 genomes]
rs6468799	0.81[EUR][1000 genomes]
rs6987380	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988793	0.94[EUR][1000 genomes]
rs6997574	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000357	0.81[EUR][1000 genomes]
rs7001437	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7002547	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7003041	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7008826	0.86[EUR][1000 genomes]
rs7009385	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7011941	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7012512	0.81[EUR][1000 genomes]
rs7013506	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7015311	0.81[EUR][1000 genomes]
rs7017754	0.91[EUR][1000 genomes]
rs7812876	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7830291	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7835223	0.80[EUR][1000 genomes]
rs7835485	0.91[EUR][1000 genomes]
rs7844259	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7844292	0.90[ASN][1000 genomes]
rs7844599	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8181025	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9693504	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9693531	0.99[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102732000-102762400	Weak transcription	Lung	lung
3	chr8:102735000-102760600	Weak transcription	Liver	Liver
4	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:102743800-102761800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:102746600-102763800	Weak transcription	Left Ventricle	heart
9	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
10	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
11	chr8:102753400-102761800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:102756000-102762000	Weak transcription	Adipose Nuclei	Adipose
13	chr8:102756200-102763200	Strong transcription	Fetal Muscle Trunk	muscle
14	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
15	chr8:102756600-102759400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:102757000-102763800	Weak transcription	Brain Anterior Caudate	brain
17	chr8:102757200-102760600	Weak transcription	GM12878-XiMat	blood
18	chr8:102757200-102763200	Strong transcription	Fetal Muscle Leg	muscle
19	chr8:102757200-102764400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:102758000-102759400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr8:102758000-102761800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:102758400-102761000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:102758400-102762800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr8:102758400-102763200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:102758600-102762400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:102758800-102761000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:102759200-102759400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:102759200-102759600	Enhancers	Psoas Muscle	Psoas
29	chr8:102759200-102759800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:102759200-102759800	Genic enhancers	Ovary	ovary

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