Variant report

Variant	rs2387618
Chromosome Location	chr8:102762074-102762075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102751290..102754667-chr8:102759250..102762937,3	MCF-7	breast:

Extended variants
information (count: 94 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10091905	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10094868	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10094894	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10113785	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10216921	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10505012	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1073373	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs1077500	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1077998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808377	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808378	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10808379	0.83[CEU][hapmap]
rs10955274	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10955275	0.96[EUR][1000 genomes]
rs1111884	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1111886	0.96[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs1125334	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1125335	0.91[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11782123	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs12334693	0.83[CEU][hapmap]
rs12543380	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12545537	1.00[CEU][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs12550570	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1264933	0.83[CEU][hapmap]
rs12677525	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs13251735	0.83[CEU][hapmap]
rs13252722	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13265954	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13267715	0.92[EUR][1000 genomes]
rs13268186	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13281055	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13281871	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13282456	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1465167	1.00[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs1557336	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs1573284	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17406994	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1893366	0.83[CEU][hapmap]
rs2004556	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032121	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2154652	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2155942	0.83[CEU][hapmap]
rs2186392	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2186393	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2212701	0.87[EUR][1000 genomes]
rs2387616	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2387617	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2387619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28837777	0.84[EUR][1000 genomes]
rs2892324	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs4379418	0.84[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4493882	0.84[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4576401	0.84[EUR][1000 genomes]
rs4734040	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4734593	1.00[CEU][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs4734594	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4734595	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs4734597	0.81[EUR][1000 genomes]
rs6468792	0.96[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6468793	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6468794	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6468795	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs6468796	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6468798	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs6468799	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6987380	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6988793	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes]
rs6997574	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7000357	0.88[CEU][hapmap]
rs7001437	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7002547	0.95[CEU][hapmap];0.83[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7003041	0.87[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap]
rs7008826	0.91[CEU][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs7009385	1.00[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs7011941	0.88[CEU][hapmap];0.91[MEX][hapmap]
rs7012512	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs7013506	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7015311	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7017754	0.96[CEU][hapmap];0.97[GIH][hapmap];0.88[EUR][1000 genomes]
rs7812876	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813132	0.81[CEU][hapmap]
rs7827691	0.83[CEU][hapmap]
rs7830291	1.00[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs7835223	0.88[CEU][hapmap];0.91[MEX][hapmap]
rs7835485	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7838696	0.83[CEU][hapmap]
rs7844259	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7844292	0.90[CHD][hapmap];0.84[MEX][hapmap]
rs7844599	0.95[CEU][hapmap];0.80[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8181022	0.83[CEU][hapmap]
rs8181025	0.88[CEU][hapmap]
rs9297313	0.83[CEU][hapmap]
rs9693504	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9693531	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2387618	ZNF706	cis	cerebellum	SCAN
rs2387618	NCALD	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102732000-102762400	Weak transcription	Lung	lung
3	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:102746600-102763800	Weak transcription	Left Ventricle	heart
7	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
8	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
9	chr8:102756200-102763200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
11	chr8:102757000-102763800	Weak transcription	Brain Anterior Caudate	brain
12	chr8:102757200-102763200	Strong transcription	Fetal Muscle Leg	muscle
13	chr8:102757200-102764400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:102758400-102762800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:102758400-102763200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:102758600-102762400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:102759400-102763800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:102759800-102763400	Weak transcription	Ovary	ovary
19	chr8:102759800-102767800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:102760600-102762600	ZNF genes & repeats	GM12878-XiMat	blood
21	chr8:102761400-102781000	Weak transcription	Liver	Liver
22	chr8:102761800-102763200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:102761800-102763200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
24	chr8:102761800-102763800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:102762000-102762400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:102762000-102762600	ZNF genes & repeats	Adipose Nuclei	Adipose

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