Variant report

Variant	rs7017754
Chromosome Location	chr8:102767718-102767719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102767254..102769678-chr8:102771935..102774760,3	MCF-7	breast:
2	chr8:102748697..102751246-chr8:102767515..102769264,2	MCF-7	breast:
3	chr8:102756631..102759925-chr8:102765539..102768574,3	MCF-7	breast:
4	chr8:102755506..102757856-chr8:102767711..102770517,2	MCF-7	breast:

Extended variants
information (count: 100 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10091905	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10094868	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs10094894	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10113785	0.91[EUR][1000 genomes]
rs10216921	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10505012	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1073373	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1077500	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1077998	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10808377	0.96[CEU][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10808378	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs10808379	0.88[CEU][hapmap]
rs10955274	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10955275	0.93[EUR][1000 genomes]
rs1111884	0.96[CEU][hapmap]
rs1111886	1.00[CEU][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs1125334	0.92[CEU][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs1125335	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs11782123	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12334693	0.88[CEU][hapmap]
rs12543380	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12545537	0.96[CEU][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs12550570	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1264930	0.82[CEU][hapmap]
rs1264933	0.88[CEU][hapmap]
rs12677525	1.00[CEU][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs13251735	0.88[CEU][hapmap];0.82[CHD][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs13252722	0.88[EUR][1000 genomes]
rs13265954	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13267715	0.95[EUR][1000 genomes]
rs13268186	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs13281055	0.95[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13281871	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13282456	0.91[EUR][1000 genomes]
rs1465167	0.95[CEU][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.84[EUR][1000 genomes]
rs1557336	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1573284	0.92[CEU][hapmap];0.91[GIH][hapmap];0.85[EUR][1000 genomes]
rs1573285	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17406994	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1893366	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs2004556	0.88[EUR][1000 genomes]
rs2032121	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2154652	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2155938	0.82[CEU][hapmap]
rs2186392	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2186393	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2212701	0.84[EUR][1000 genomes]
rs2226724	0.82[CEU][hapmap]
rs2387616	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2387617	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2387618	0.96[CEU][hapmap];0.97[GIH][hapmap];0.88[EUR][1000 genomes]
rs2387619	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs28837777	0.88[EUR][1000 genomes]
rs2892324	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4379418	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4493882	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4576401	0.88[EUR][1000 genomes]
rs4734040	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4734593	0.96[CEU][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs4734594	0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4734595	1.00[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs4734596	0.82[EUR][1000 genomes]
rs6468792	0.92[CEU][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6468793	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6468794	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6468795	1.00[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs6468796	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6468798	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6468799	1.00[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs6984260	0.82[CEU][hapmap]
rs6987380	0.92[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6988793	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6997574	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs7000357	0.84[CEU][hapmap]
rs7001437	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7002547	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs7003041	0.83[GIH][hapmap]
rs7008826	0.96[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs7009385	0.96[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.84[EUR][1000 genomes]
rs7011941	0.84[CEU][hapmap]
rs7012512	1.00[CEU][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs7013506	0.88[EUR][1000 genomes]
rs7015311	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7812876	0.85[EUR][1000 genomes]
rs7813132	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs7827691	0.88[CEU][hapmap]
rs7827941	0.82[CEU][hapmap]
rs7830291	0.96[CEU][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.84[EUR][1000 genomes]
rs7835223	0.84[CEU][hapmap];0.82[CHD][hapmap]
rs7835485	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7838696	0.87[CEU][hapmap]
rs7844259	0.81[EUR][1000 genomes]
rs7844292	0.82[GIH][hapmap]
rs7844599	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs8181022	0.88[CEU][hapmap]
rs8181025	0.84[CEU][hapmap]
rs9297313	0.88[CEU][hapmap]
rs9693504	0.95[CEU][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9693531	0.96[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431444	chr8:102766776-102770974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7017754	NCALD	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
6	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
7	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
8	chr8:102759800-102767800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:102761400-102781000	Weak transcription	Liver	Liver
10	chr8:102763200-102768400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:102763200-102768400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:102764200-102768400	Weak transcription	Lung	lung
13	chr8:102764400-102768200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:102765000-102768000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:102765000-102770400	Weak transcription	Ovary	ovary
16	chr8:102765400-102770000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:102765600-102769200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:102765800-102768800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr8:102767600-102768400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:102767600-102769000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:102767600-102769200	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr8:102767600-102769600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood

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