Variant report

Variant	rs1557336
Chromosome Location	chr8:102773488-102773489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102767254..102769678-chr8:102771935..102774760,3	MCF-7	breast:
2	chr10:36535479..36536979-chr8:102772125..102773809,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10091905	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10094868	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10094894	0.88[EUR][1000 genomes]
rs10113785	0.88[EUR][1000 genomes]
rs10216921	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10505012	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1073373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1077500	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs1077998	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs10808377	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10808378	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10808379	0.88[CEU][hapmap]
rs10955274	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10955275	0.88[EUR][1000 genomes]
rs1111884	0.96[CEU][hapmap]
rs1111886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1125334	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1125335	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11782123	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12334693	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs12543380	0.88[EUR][1000 genomes]
rs12545537	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs12550570	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1264930	0.83[CEU][hapmap]
rs1264933	0.88[CEU][hapmap]
rs12677525	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13251735	0.88[CEU][hapmap]
rs13252722	0.85[EUR][1000 genomes]
rs13265954	0.88[EUR][1000 genomes]
rs13267715	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13268186	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs13281055	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs13281871	0.88[EUR][1000 genomes]
rs13282456	0.88[EUR][1000 genomes]
rs1465167	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs1573284	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs17406994	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1893366	0.88[CEU][hapmap]
rs2004556	0.91[EUR][1000 genomes]
rs2032121	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2154652	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2155938	0.83[CEU][hapmap]
rs2186392	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2186393	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2212701	0.80[EUR][1000 genomes]
rs2226724	0.83[CEU][hapmap]
rs2226725	0.80[EUR][1000 genomes]
rs2387616	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2387617	0.88[EUR][1000 genomes]
rs2387618	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2387619	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs28837777	0.91[EUR][1000 genomes]
rs2892324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4379418	0.88[EUR][1000 genomes]
rs4493882	0.88[EUR][1000 genomes]
rs4576401	0.91[EUR][1000 genomes]
rs4734040	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs4734593	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734594	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4734595	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4734596	0.85[EUR][1000 genomes]
rs6468792	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6468793	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6468794	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6468795	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6468796	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6468798	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6468799	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6984260	0.83[CEU][hapmap]
rs6987380	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6988793	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6997574	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7000357	0.84[CEU][hapmap]
rs7001437	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7002547	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs7008826	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7009385	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs7011941	0.84[CEU][hapmap]
rs7012512	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7013506	0.85[EUR][1000 genomes]
rs7015311	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7017754	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7812876	0.88[EUR][1000 genomes]
rs7813132	0.81[CEU][hapmap]
rs7827691	0.88[CEU][hapmap]
rs7827941	0.83[CEU][hapmap]
rs7830291	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs7835223	0.84[CEU][hapmap]
rs7835485	1.00[CEU][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7838696	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs7844259	0.81[EUR][1000 genomes]
rs7844599	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs8181022	0.88[CEU][hapmap]
rs8181025	0.84[CEU][hapmap]
rs9297313	0.88[CEU][hapmap]
rs9693504	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs9693531	0.96[CEU][hapmap];0.88[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102761400-102781000	Weak transcription	Liver	Liver
2	chr8:102769000-102774800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:102770200-102774200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:102770200-102774200	Enhancers	Brain Cingulate Gyrus	brain
6	chr8:102770200-102774200	Enhancers	Rectal Smooth Muscle	rectum
7	chr8:102770400-102773800	Enhancers	Right Atrium	heart
8	chr8:102770400-102774000	Enhancers	Brain Angular Gyrus	brain
9	chr8:102770400-102774000	Enhancers	Brain Substantia Nigra	brain
10	chr8:102770400-102774200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:102770400-102774200	Enhancers	Fetal Stomach	stomach
12	chr8:102770400-102774400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr8:102770600-102773600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr8:102770600-102786800	Weak transcription	Esophagus	oesophagus
15	chr8:102770800-102774000	Enhancers	Adipose Nuclei	Adipose
16	chr8:102770800-102774400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:102771000-102774200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:102771200-102773600	Enhancers	HMEC	breast
19	chr8:102771200-102774200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr8:102771200-102774600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:102771200-102775000	Enhancers	Fetal Muscle Leg	muscle
22	chr8:102771400-102774200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:102771400-102774200	Enhancers	Fetal Lung	lung
24	chr8:102771400-102774600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:102771600-102773600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:102771600-102773600	Enhancers	Pancreas	Pancrea
27	chr8:102771600-102773800	Enhancers	Brain Hippocampus Middle	brain
28	chr8:102771600-102774000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:102771600-102774000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr8:102771600-102774400	Enhancers	Colon Smooth Muscle	Colon
31	chr8:102771600-102774400	Enhancers	Psoas Muscle	Psoas
32	chr8:102771800-102773600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr8:102771800-102774000	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr8:102771800-102774000	Enhancers	Placenta Amnion	Placenta Amnion
35	chr8:102771800-102774000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr8:102771800-102774200	Enhancers	Left Ventricle	heart
37	chr8:102771800-102774200	Enhancers	Ovary	ovary
38	chr8:102771800-102774200	Enhancers	HSMMtube	muscle
39	chr8:102772000-102773600	Enhancers	Fetal Intestine Large	intestine
40	chr8:102772000-102773600	Enhancers	Fetal Intestine Small	intestine
41	chr8:102772000-102773600	Enhancers	NH-A	brain
42	chr8:102772000-102773800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr8:102772000-102774000	Enhancers	Stomach Smooth Muscle	stomach
44	chr8:102772000-102774200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr8:102772000-102774200	Enhancers	Fetal Kidney	kidney
46	chr8:102772000-102774200	Enhancers	HSMM	muscle
47	chr8:102772000-102774400	Enhancers	Right Ventricle	heart
48	chr8:102772200-102773800	Enhancers	H9 Cell Line	embryonic stem cell
49	chr8:102772200-102773800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:102772200-102773800	Weak transcription	Rectal Mucosa Donor 29	rectum

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