Variant report

Variant	rs1465167
Chromosome Location	chr8:102798565-102798566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102791686..102794571-chr8:102795797..102798872,3	MCF-7	breast:
2	chr8:102793506..102795594-chr8:102796708..102798852,2	K562	blood:
3	chr8:102796504..102798716-chr8:102801614..102804455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10091905	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10094868	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10094894	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10113785	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10216921	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10505012	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1073373	0.95[CEU][hapmap]
rs1074703	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1077500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077998	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10808377	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10808378	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10808379	0.83[CEU][hapmap]
rs10955274	0.95[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10955275	0.92[EUR][1000 genomes]
rs1111884	1.00[CEU][hapmap]
rs1111886	0.95[CEU][hapmap]
rs1125334	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1125335	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11782123	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs12334693	0.83[CEU][hapmap]
rs12543380	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12545537	1.00[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs12550570	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1264933	0.83[CEU][hapmap]
rs12677525	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs13251735	0.83[CEU][hapmap];0.90[CHD][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13252722	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13265954	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13268186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13281055	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13281871	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13282456	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1557336	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs1573284	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs17406994	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1893366	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs2004556	0.87[EUR][1000 genomes]
rs2032121	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2154652	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2155942	0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2186392	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2186393	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2212701	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2387616	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2387617	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2387618	1.00[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs2387619	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs28837777	0.89[EUR][1000 genomes]
rs2892324	0.95[CEU][hapmap]
rs4379418	0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4493882	0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4576401	0.89[EUR][1000 genomes]
rs4734040	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4734593	1.00[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs4734594	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4734595	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs4734596	0.83[EUR][1000 genomes]
rs4734597	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6468792	0.96[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6468793	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6468794	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6468795	0.95[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs6468796	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6468798	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6468799	0.95[CEU][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs6468801	0.87[CHD][hapmap]
rs6987380	0.96[CEU][hapmap];0.94[CHB][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6988793	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs6997574	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7000357	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7001437	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7002547	0.95[CEU][hapmap];0.89[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7003041	0.89[CHB][hapmap];0.82[CHD][hapmap]
rs7008826	0.91[CEU][hapmap]
rs7009385	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7011941	0.87[ASW][hapmap];0.88[CEU][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7012512	0.95[CEU][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes]
rs7013506	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7015311	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs7017754	0.95[CEU][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.84[EUR][1000 genomes]
rs7812876	0.84[EUR][1000 genomes]
rs7813132	0.85[CEU][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7827691	0.83[CEU][hapmap]
rs7827941	0.84[CHD][hapmap]
rs7830291	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835223	0.88[CEU][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7835485	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs7838696	0.83[CEU][hapmap]
rs7844292	0.89[CHB][hapmap]
rs7844599	0.95[CEU][hapmap];0.93[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8181022	0.83[CEU][hapmap]
rs8181025	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9297313	0.83[CEU][hapmap]
rs9693504	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9693531	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1465167	NCALD	cis	parietal	SCAN
rs1465167	FOXL1	trans	parietal	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102774600-102799600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:102780200-102799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102781600-102801000	Weak transcription	Liver	Liver
5	chr8:102783000-102799600	Weak transcription	Brain Substantia Nigra	brain
6	chr8:102783600-102799400	Weak transcription	Adipose Nuclei	Adipose
7	chr8:102783600-102800800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:102784000-102799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:102784200-102802200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:102787400-102802400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:102787800-102802600	Weak transcription	Right Ventricle	heart
12	chr8:102790600-102802400	Weak transcription	Left Ventricle	heart
13	chr8:102790600-102802600	Weak transcription	Psoas Muscle	Psoas
14	chr8:102795200-102803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:102795600-102799000	Genic enhancers	Fetal Muscle Leg	muscle
16	chr8:102796200-102799200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:102796400-102803000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:102796600-102800000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:102796800-102802400	Weak transcription	NHDF-Ad	bronchial
20	chr8:102797000-102799600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:102797800-102798600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:102797800-102799400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:102798000-102798600	Enhancers	Fetal Stomach	stomach
24	chr8:102798000-102798600	Enhancers	Pancreas	Pancrea
25	chr8:102798000-102798600	Enhancers	Right Atrium	heart
26	chr8:102798000-102798800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:102798000-102799000	Enhancers	Ovary	ovary
28	chr8:102798000-102799400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr8:102798200-102798600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:102798200-102798600	Genic enhancers	GM12878-XiMat	blood
31	chr8:102798200-102800000	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr8:102798200-102800200	Enhancers	Fetal Lung	lung
33	chr8:102798400-102798600	Enhancers	Colon Smooth Muscle	Colon
34	chr8:102798400-102798800	Enhancers	Aorta	Aorta
35	chr8:102798400-102798800	Active TSS	Fetal Brain Male	brain
36	chr8:102798400-102798800	Enhancers	Fetal Kidney	kidney

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