Variant report

Variant	rs2155938
Chromosome Location	chr8:102847262-102847263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102841778..102844657-chr8:102844886..102847440,3	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1073373	0.83[CEU][hapmap]
rs10808378	0.82[CEU][hapmap]
rs10808379	0.88[CEU][hapmap]
rs10955274	0.82[CEU][hapmap]
rs1111886	0.82[CEU][hapmap]
rs1144545	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1148496	1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs1148497	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1148498	0.93[CHB][hapmap];0.90[ASN][1000 genomes]
rs1148499	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1148501	0.89[ASN][1000 genomes]
rs11782123	0.82[CEU][hapmap]
rs12334693	0.88[CEU][hapmap]
rs1264865	1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs1264866	0.94[CHB][hapmap];0.90[ASN][1000 genomes]
rs1264930	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1264931	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1264932	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1264933	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1264952	0.88[ASN][1000 genomes]
rs1264953	0.83[ASN][1000 genomes]
rs1264954	0.89[ASN][1000 genomes]
rs12677525	0.83[CEU][hapmap]
rs1272384	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1313944	0.88[AMR][1000 genomes]
rs13251735	0.88[CEU][hapmap]
rs1557336	0.83[CEU][hapmap]
rs17406994	0.82[CEU][hapmap]
rs1893366	0.88[CEU][hapmap]
rs2155939	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155940	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2155941	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155942	0.96[CEU][hapmap]
rs2226724	1.00[CEU][hapmap]
rs2509895	0.88[ASN][1000 genomes]
rs28623673	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2892324	0.85[CEU][hapmap]
rs472471	1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs472638	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs472963	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734595	0.83[CEU][hapmap]
rs477236	0.86[AMR][1000 genomes]
rs478189	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs478875	0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs478896	0.83[AMR][1000 genomes]
rs478917	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs479041	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs480570	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs480955	0.89[AMR][1000 genomes]
rs481545	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs482023	0.83[CEU][hapmap]
rs485252	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs485263	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs485363	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs486196	0.82[CEU][hapmap];0.89[AMR][1000 genomes]
rs487863	0.83[CEU][hapmap]
rs488034	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs489973	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs494352	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs495636	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs497905	0.88[AMR][1000 genomes]
rs502334	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs513472	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs517868	0.83[CEU][hapmap]
rs519197	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs520880	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs526533	0.88[AMR][1000 genomes]
rs529684	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs531624	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs534512	0.94[CHB][hapmap];0.90[ASN][1000 genomes]
rs537941	0.94[CHB][hapmap];0.94[ASN][1000 genomes]
rs539663	0.94[CHB][hapmap];0.92[ASN][1000 genomes]
rs540459	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs544928	0.86[AMR][1000 genomes]
rs549281	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs550281	0.83[CEU][hapmap]
rs551295	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs554036	0.94[CHB][hapmap]
rs557654	0.80[AMR][1000 genomes]
rs558772	0.87[AMR][1000 genomes]
rs562037	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs563463	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs566264	0.89[AMR][1000 genomes]
rs566315	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs566392	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs568194	0.87[CEU][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs569015	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs569787	0.86[CEU][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs576173	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs577756	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs578603	0.85[AMR][1000 genomes]
rs6468793	0.83[CEU][hapmap]
rs6468794	0.83[CEU][hapmap]
rs6468795	0.82[CEU][hapmap]
rs6468796	0.83[CEU][hapmap]
rs6468798	0.83[CEU][hapmap]
rs6468799	0.83[CEU][hapmap]
rs67887846	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984260	1.00[CEU][hapmap]
rs6991592	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7000357	0.84[CEU][hapmap]
rs7011941	0.84[CEU][hapmap]
rs7012512	0.86[CEU][hapmap]
rs7015311	0.83[CEU][hapmap]
rs7017754	0.82[CEU][hapmap]
rs7813132	0.95[CEU][hapmap]
rs7827304	0.92[CEU][hapmap]
rs7827691	0.88[CEU][hapmap]
rs7827941	1.00[CEU][hapmap]
rs7828175	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7828516	0.88[CEU][hapmap]
rs7829693	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs7835223	0.84[CEU][hapmap]
rs7835485	0.83[CEU][hapmap]
rs7838696	0.88[CEU][hapmap]
rs7840760	0.92[CEU][hapmap]
rs7842147	0.89[EUR][1000 genomes]
rs8181022	0.88[CEU][hapmap]
rs8181025	0.84[CEU][hapmap]
rs9297313	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693504	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102835000-102852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:102838600-102848400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:102842200-102851000	Weak transcription	Fetal Kidney	kidney
5	chr8:102843800-102848000	Enhancers	HMEC	breast
6	chr8:102844200-102847400	Weak transcription	Esophagus	oesophagus
7	chr8:102844600-102849400	Weak transcription	Right Ventricle	heart
8	chr8:102845400-102847400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:102845400-102847400	Weak transcription	NHEK	skin
10	chr8:102845400-102847800	Weak transcription	Right Atrium	heart
11	chr8:102845400-102849400	Weak transcription	Fetal Heart	heart
12	chr8:102845400-102862000	Weak transcription	Left Ventricle	heart
13	chr8:102845600-102855000	Weak transcription	Aorta	Aorta
14	chr8:102846800-102849400	Weak transcription	Ovary	ovary
15	chr8:102846800-102851200	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:102846800-102866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:102847000-102847800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links