Variant report

Variant	rs490096
Chromosome Location	chr8:102872890-102872891
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1144545	0.87[CEU][hapmap];0.80[CHB][hapmap];0.91[ASN][1000 genomes]
rs1148496	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1148497	0.87[CEU][hapmap]
rs1148498	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1148499	0.87[CEU][hapmap]
rs1148501	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1264865	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1264866	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1264931	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1264932	0.82[EUR][1000 genomes]
rs1264942	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1264948	0.86[EUR][1000 genomes]
rs1264952	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1264953	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1264954	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1271946	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1313944	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2155939	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2155940	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs2155941	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs2509895	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35473722	0.82[ASN][1000 genomes]
rs472471	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs472638	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes]
rs472963	0.87[CEU][hapmap]
rs473498	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs477236	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs478069	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs478092	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs478189	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs478875	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs478896	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs478917	0.87[CEU][hapmap];0.84[CHB][hapmap];0.91[ASN][1000 genomes]
rs479041	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs479742	0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs480570	0.87[CEU][hapmap];0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs480955	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs481545	0.87[CEU][hapmap];0.85[CHB][hapmap];0.90[ASN][1000 genomes]
rs482023	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs484657	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs485252	0.82[ASN][1000 genomes]
rs485363	0.93[ASN][1000 genomes]
rs486196	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs486496	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs487863	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs487987	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs488034	0.87[CEU][hapmap]
rs489973	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs490032	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs490125	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs494352	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs495636	0.87[CEU][hapmap];0.85[CHB][hapmap];0.91[ASN][1000 genomes]
rs497905	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs502334	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs505460	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs506026	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs508386	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs510524	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs512202	1.00[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs513159	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs513472	0.87[CEU][hapmap]
rs514057	0.85[EUR][1000 genomes]
rs517868	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs519197	0.87[CEU][hapmap]
rs520880	0.87[CEU][hapmap]
rs526533	0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs529684	0.87[CEU][hapmap];0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs531624	0.87[CEU][hapmap];0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs534512	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs537941	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs539663	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs540459	0.87[CEU][hapmap];0.84[CHB][hapmap];0.91[ASN][1000 genomes]
rs542208	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs543897	0.93[EUR][1000 genomes]
rs544821	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs544928	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs549281	0.87[CEU][hapmap]
rs550281	0.91[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs551295	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs553463	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs554036	0.96[CEU][hapmap]
rs554945	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs557654	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs558159	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs558772	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs558985	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs561000	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs561603	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs562037	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs563463	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs563493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs564718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs566264	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs566315	0.87[CEU][hapmap];0.85[CHB][hapmap];0.91[ASN][1000 genomes]
rs566392	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs566501	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568194	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs569015	0.87[CEU][hapmap]
rs569787	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs571673	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs572692	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs576173	0.83[ASN][1000 genomes]
rs577756	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs578603	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6991592	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7828175	0.84[CEU][hapmap]
rs7828516	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7829693	0.83[CEU][hapmap]
rs7840760	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1030076	chr8:102866179-102896458	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102862800-102876000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:102866600-102876000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:102869200-102880200	Weak transcription	Aorta	Aorta
4	chr8:102870000-102891200	Weak transcription	Ovary	ovary
5	chr8:102870600-102879000	Weak transcription	Small Intestine	intestine
6	chr8:102871000-102875200	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:102871000-102880400	Weak transcription	Psoas Muscle	Psoas
8	chr8:102871000-102880800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:102871200-102876000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:102872200-102873200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:102872400-102873000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:102872400-102873000	Enhancers	NHDF-Ad	bronchial

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