Variant report

Variant	rs561603
Chromosome Location	chr8:102914741-102914742
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102912593..102916375-chr8:102916443..102918583,3	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1144545	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1148497	0.84[EUR][1000 genomes]
rs1148498	0.82[EUR][1000 genomes]
rs1148499	0.84[EUR][1000 genomes]
rs1148501	0.80[EUR][1000 genomes]
rs1264865	0.80[EUR][1000 genomes]
rs1264866	0.82[EUR][1000 genomes]
rs1264942	0.92[ASN][1000 genomes]
rs1264946	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1264948	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1264949	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1271946	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1313944	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1313945	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs472638	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs472963	0.84[EUR][1000 genomes]
rs473498	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs477236	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs478092	0.87[EUR][1000 genomes]
rs478189	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs478875	0.82[EUR][1000 genomes]
rs478896	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs478917	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs479041	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs479742	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs480570	0.91[EUR][1000 genomes]
rs480955	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs481545	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs482023	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs484657	0.89[EUR][1000 genomes]
rs485252	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs485263	0.91[EUR][1000 genomes]
rs485363	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs486196	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs486496	0.88[EUR][1000 genomes]
rs487863	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs487987	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs488034	0.84[EUR][1000 genomes]
rs489973	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs490032	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs490096	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs490125	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs494352	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs495636	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs497905	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs502334	0.91[EUR][1000 genomes]
rs505460	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs506026	0.87[EUR][1000 genomes]
rs508386	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs510524	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs512202	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs513159	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs513472	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs514057	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs517868	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs519197	0.84[EUR][1000 genomes]
rs520880	0.84[EUR][1000 genomes]
rs526533	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs529684	0.91[EUR][1000 genomes]
rs531624	0.91[EUR][1000 genomes]
rs534512	0.82[EUR][1000 genomes]
rs537941	0.82[EUR][1000 genomes]
rs539663	0.82[EUR][1000 genomes]
rs540459	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs542208	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs543897	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs544821	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs544928	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs549281	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs550281	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs551295	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs553463	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs554945	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs557654	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs558159	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs558772	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs558985	0.89[EUR][1000 genomes]
rs561000	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs562037	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs563463	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs564718	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs566264	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs566315	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs566392	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs566501	0.87[ASN][1000 genomes]
rs568194	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs569015	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs569787	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs571673	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs572692	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs576173	0.91[EUR][1000 genomes]
rs577756	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs578603	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102896400-102914800	Weak transcription	Right Ventricle	heart
2	chr8:102910200-102916000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:102910200-102919800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:102914000-102914800	Enhancers	Fetal Muscle Trunk	muscle
5	chr8:102914000-102914800	Enhancers	Fetal Muscle Leg	muscle
6	chr8:102914000-102916200	Enhancers	Lung	lung
7	chr8:102914200-102915400	Flanking Active TSS	GM12878-XiMat	blood
8	chr8:102914200-102915400	Enhancers	NHEK	skin
9	chr8:102914200-102916400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:102914200-102916400	Enhancers	HMEC	breast
11	chr8:102914200-102916600	Enhancers	Fetal Heart	heart
12	chr8:102914400-102914800	Weak transcription	Primary T cells from cord blood	blood
13	chr8:102914400-102914800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:102914400-102915000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr8:102914400-102915400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:102914400-102915400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:102914600-102914800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr8:102914600-102914800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr8:102914600-102914800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:102914600-102914800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr8:102914600-102914800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:102914600-102914800	Active TSS	Adipose Nuclei	Adipose
23	chr8:102914600-102914800	Enhancers	Liver	Liver
24	chr8:102914600-102914800	Enhancers	Brain Hippocampus Middle	brain
25	chr8:102914600-102914800	Enhancers	Colonic Mucosa	Colon
26	chr8:102914600-102914800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr8:102914600-102914800	Flanking Active TSS	Ovary	ovary
28	chr8:102914600-102914800	Enhancers	Psoas Muscle	Psoas
29	chr8:102914600-102914800	Enhancers	Right Atrium	heart
30	chr8:102914600-102914800	Enhancers	Thymus	Thymus
31	chr8:102914600-102914800	Enhancers	Hela-S3	cervix
32	chr8:102914600-102914800	Enhancers	HepG2	liver
33	chr8:102914600-102914800	Active TSS	HSMMtube	muscle
34	chr8:102914600-102914800	Flanking Active TSS	K562	blood
35	chr8:102914600-102915000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr8:102914600-102915000	Enhancers	Brain Angular Gyrus	brain
37	chr8:102914600-102915000	Enhancers	Brain Anterior Caudate	brain
38	chr8:102914600-102915000	Enhancers	Fetal Lung	lung
39	chr8:102914600-102915000	Enhancers	Pancreas	Pancrea
40	chr8:102914600-102915000	Flanking Active TSS	NHDF-Ad	bronchial
41	chr8:102914600-102915200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr8:102914600-102915200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr8:102914600-102915200	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr8:102914600-102915200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:102914600-102915200	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr8:102914600-102915200	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr8:102914600-102915200	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr8:102914600-102915200	Enhancers	Stomach Mucosa	stomach
49	chr8:102914600-102915200	Enhancers	A549	lung
50	chr8:102914600-102915400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links