Variant report

Variant	rs7845165
Chromosome Location	chr8:126287888-126287889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126287173..126289298-chr8:126442431..126444189,2	MCF-7	breast:
2	chr8:126286342..126289243-chr8:126441006..126444375,7	MCF-7	breast:
3	chr8:126287704..126290628-chr8:126303543..126305382,2	MCF-7	breast:
4	chr8:126287701..126290542-chr8:126297201..126298945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10086862	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10095360	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10101690	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs10108305	0.94[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10112737	0.94[CEU][hapmap];0.84[JPT][hapmap]
rs10956234	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10956235	0.83[ASN][1000 genomes]
rs10956236	0.92[ASN][1000 genomes]
rs16900488	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs16900500	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs4279612	0.94[CHB][hapmap];0.93[ASN][1000 genomes]
rs4294203	0.92[ASN][1000 genomes]
rs4350000	1.00[JPT][hapmap]
rs4464986	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs4481616	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs4534140	0.89[CEU][hapmap]
rs4565472	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs4602904	0.82[CEU][hapmap]
rs4604454	0.93[CEU][hapmap]
rs6415490	0.84[ASN][1000 genomes]
rs6470346	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6470348	0.83[YRI][hapmap]
rs6985411	0.94[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs6991820	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6995986	0.81[JPT][hapmap]
rs7008046	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs7011185	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7017794	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs73351278	0.80[AFR][1000 genomes]
rs7812933	0.94[ASN][1000 genomes]
rs7813432	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs7831918	0.91[YRI][hapmap]
rs7843098	0.94[ASN][1000 genomes]
rs7844459	0.90[ASN][1000 genomes]
rs9297714	0.83[CHB][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv3419040	chr8:126271495-126339914	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv891436	chr8:126283766-126345076	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126262200-126288200	Weak transcription	Ovary	ovary
2	chr8:126264800-126310600	Weak transcription	Aorta	Aorta
3	chr8:126265600-126296600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:126275800-126289000	Weak transcription	Dnd41	blood
5	chr8:126280000-126289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:126283400-126288000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:126283400-126292600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:126283600-126288000	Enhancers	NHEK	skin
9	chr8:126284200-126290400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:126284200-126290400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:126285200-126288400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:126285200-126289200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr8:126285600-126292400	Weak transcription	Fetal Brain Male	brain
14	chr8:126286200-126290200	Weak transcription	Liver	Liver
15	chr8:126286200-126290400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:126286200-126292200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:126286200-126294800	Weak transcription	Colonic Mucosa	Colon
18	chr8:126286200-126301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr8:126286400-126288800	Weak transcription	Primary T cells from cord blood	blood
20	chr8:126286400-126289000	Weak transcription	Right Atrium	heart
21	chr8:126286400-126289200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:126286400-126289400	Weak transcription	Placenta	Placenta
23	chr8:126286400-126290000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr8:126286400-126290400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:126286400-126290400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:126286400-126290400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:126286400-126290400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:126286400-126290400	Weak transcription	Adipose Nuclei	Adipose
29	chr8:126286400-126290400	Weak transcription	Esophagus	oesophagus
30	chr8:126286400-126290400	Weak transcription	Gastric	stomach
31	chr8:126286400-126290400	Weak transcription	Psoas Muscle	Psoas
32	chr8:126286400-126290400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:126286400-126290400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr8:126286400-126290400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:126286400-126290600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr8:126286400-126290600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:126286400-126290600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:126286400-126290600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr8:126286400-126290600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:126286400-126290600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr8:126286400-126290600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:126286400-126290600	Weak transcription	Colon Smooth Muscle	Colon
43	chr8:126286400-126290600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr8:126286400-126290600	Weak transcription	Fetal Heart	heart
45	chr8:126286400-126290600	Weak transcription	NHLF	lung
46	chr8:126286400-126290800	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:126286400-126291200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr8:126286400-126291200	Weak transcription	NHDF-Ad	bronchial
49	chr8:126286400-126292000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:126286400-126292000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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