Variant report

Variant	rs7831918
Chromosome Location	chr8:126300866-126300867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126298317..126304061-chr8:126440512..126444095,5	MCF-7	breast:
2	chr8:126290287..126294135-chr8:126298870..126301775,4	K562	blood:
3	chr8:126300520..126302327-chr8:126305625..126307763,2	K562	blood:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10108305	0.83[LWK][hapmap];0.92[MKK][hapmap];0.91[YRI][hapmap]
rs16900461	1.00[GIH][hapmap]
rs16900491	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs16900500	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58527250	0.98[EUR][1000 genomes]
rs59099103	0.98[EUR][1000 genomes]
rs6470348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6984563	1.00[GIH][hapmap]
rs6985382	1.00[EUR][1000 genomes]
rs6997329	0.92[EUR][1000 genomes]
rs7002315	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs73336837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351278	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841990	0.98[EUR][1000 genomes]
rs7845165	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv3419040	chr8:126271495-126339914	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv891436	chr8:126283766-126345076	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126264800-126310600	Weak transcription	Aorta	Aorta
2	chr8:126286200-126301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:126286400-126301000	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:126286400-126301200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:126286600-126301200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:126286600-126302200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:126290800-126301200	Weak transcription	Right Atrium	heart
8	chr8:126291000-126321600	Weak transcription	Primary B cells from cord blood	blood
9	chr8:126291200-126321000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr8:126291400-126301400	Weak transcription	Primary T cells from cord blood	blood
11	chr8:126293400-126301200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:126293600-126301000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:126293600-126301200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:126293800-126301200	Weak transcription	Fetal Lung	lung
15	chr8:126295400-126303200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr8:126295600-126301400	Weak transcription	Colonic Mucosa	Colon
17	chr8:126295600-126302600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr8:126295800-126301200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr8:126296000-126301200	Weak transcription	Small Intestine	intestine
20	chr8:126296800-126301000	Weak transcription	Left Ventricle	heart
21	chr8:126296800-126301200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:126297000-126301600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:126297200-126301200	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:126297400-126301200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:126297400-126301400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:126297600-126301400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr8:126297800-126301000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:126297800-126301200	Weak transcription	HSMMtube	muscle
29	chr8:126298000-126301200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr8:126298000-126301200	Weak transcription	A549	lung
31	chr8:126298200-126301200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr8:126298200-126301200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:126298200-126301200	Weak transcription	Stomach Mucosa	stomach
34	chr8:126298200-126301400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr8:126298200-126306000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr8:126298400-126301000	Weak transcription	Fetal Thymus	thymus
37	chr8:126298400-126301200	Weak transcription	Pancreas	Pancrea
38	chr8:126298400-126301400	Weak transcription	Thymus	Thymus
39	chr8:126298400-126303600	Weak transcription	Liver	Liver
40	chr8:126298400-126306600	Weak transcription	Psoas Muscle	Psoas
41	chr8:126298400-126312800	Weak transcription	Gastric	stomach
42	chr8:126299200-126301200	Weak transcription	Fetal Intestine Small	intestine
43	chr8:126299600-126302800	Enhancers	K562	blood
44	chr8:126299600-126304200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr8:126299800-126301200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr8:126299800-126301400	Weak transcription	GM12878-XiMat	blood
47	chr8:126299800-126303200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:126300000-126301400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:126300200-126301600	Weak transcription	Fetal Intestine Large	intestine
50	chr8:126300200-126303000	Enhancers	Fetal Heart	heart

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