Variant report

Variant	rs6985382
Chromosome Location	chr8:126282599-126282600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr8:126282306-126284348	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126280606..126282810-chr8:126295937..126297699,2	MCF-7	breast:
2	chr8:126281825..126283978-chr8:126442164..126443779,2	K562	blood:

Variant related genes	Relation type
RN7SL329P	TF binding region
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16900491	0.90[EUR][1000 genomes]
rs16900500	0.97[EUR][1000 genomes]
rs58527250	0.98[EUR][1000 genomes]
rs59099103	0.98[EUR][1000 genomes]
rs6470348	1.00[EUR][1000 genomes]
rs6997329	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7002315	0.93[EUR][1000 genomes]
rs73336837	1.00[EUR][1000 genomes]
rs73351278	1.00[EUR][1000 genomes]
rs7831918	1.00[EUR][1000 genomes]
rs7841990	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv3419040	chr8:126271495-126339914	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126255400-126287800	Weak transcription	Primary B cells from cord blood	blood
2	chr8:126261400-126286000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:126262200-126288200	Weak transcription	Ovary	ovary
4	chr8:126264800-126310600	Weak transcription	Aorta	Aorta
5	chr8:126265600-126296600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:126272800-126283200	Weak transcription	K562	blood
7	chr8:126272800-126283400	Weak transcription	HMEC	breast
8	chr8:126272800-126283600	Weak transcription	Fetal Intestine Small	intestine
9	chr8:126272800-126283800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:126273600-126285200	Weak transcription	Stomach Mucosa	stomach
11	chr8:126273800-126283600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:126275400-126284600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:126275600-126283600	Weak transcription	HUVEC	blood vessel
14	chr8:126275600-126284600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr8:126275600-126285200	Weak transcription	Primary T cells from cord blood	blood
16	chr8:126275600-126286000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:126275800-126289000	Weak transcription	Dnd41	blood
18	chr8:126276800-126285800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:126276800-126286000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr8:126277000-126285400	Weak transcription	Thymus	Thymus
21	chr8:126277000-126285800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:126278000-126286000	Weak transcription	Fetal Thymus	thymus
23	chr8:126278400-126285200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:126279800-126283600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:126280000-126282600	Weak transcription	Psoas Muscle	Psoas
26	chr8:126280000-126282800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:126280000-126289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:126280200-126285200	Weak transcription	Right Atrium	heart
29	chr8:126281000-126282600	Enhancers	A549	lung
30	chr8:126281000-126283600	Weak transcription	Osteobl	bone
31	chr8:126281200-126283600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:126281200-126283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:126281200-126285200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr8:126281200-126285400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr8:126281400-126285200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr8:126281400-126285200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr8:126281600-126285200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:126281600-126285200	Weak transcription	Esophagus	oesophagus
39	chr8:126281600-126286000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr8:126281800-126283600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:126282000-126282800	Weak transcription	Hela-S3	cervix
42	chr8:126282000-126283400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr8:126282200-126283600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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