Variant report

Variant	rs7841990
Chromosome Location	chr8:126277484-126277485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126276140..126278648-chr8:126441866..126444014,2	MCF-7	breast:
2	chr8:126272501..126275279-chr8:126275432..126278029,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16900491	0.92[EUR][1000 genomes]
rs16900500	0.95[EUR][1000 genomes]
rs58527250	1.00[EUR][1000 genomes]
rs59099103	1.00[EUR][1000 genomes]
rs6470348	0.98[EUR][1000 genomes]
rs6985382	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6997329	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7002315	0.95[EUR][1000 genomes]
rs73336837	0.98[EUR][1000 genomes]
rs73351278	0.98[EUR][1000 genomes]
rs7831918	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv3419040	chr8:126271495-126339914	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126255400-126287800	Weak transcription	Primary B cells from cord blood	blood
2	chr8:126261400-126286000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:126262200-126288200	Weak transcription	Ovary	ovary
4	chr8:126263400-126279000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:126264800-126310600	Weak transcription	Aorta	Aorta
6	chr8:126265600-126296600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:126268600-126280800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:126272800-126279600	Weak transcription	A549	lung
9	chr8:126272800-126283200	Weak transcription	K562	blood
10	chr8:126272800-126283400	Weak transcription	HMEC	breast
11	chr8:126272800-126283600	Weak transcription	Fetal Intestine Small	intestine
12	chr8:126272800-126283800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr8:126273600-126279400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:126273600-126285200	Weak transcription	Stomach Mucosa	stomach
15	chr8:126273800-126280400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:126273800-126280600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:126273800-126283600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr8:126274000-126278000	Enhancers	Fetal Thymus	thymus
19	chr8:126275200-126277800	Weak transcription	Lung	lung
20	chr8:126275400-126284600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr8:126275600-126283600	Weak transcription	HUVEC	blood vessel
22	chr8:126275600-126284600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr8:126275600-126285200	Weak transcription	Primary T cells from cord blood	blood
24	chr8:126275600-126286000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:126275800-126289000	Weak transcription	Dnd41	blood
26	chr8:126276000-126279200	Weak transcription	Psoas Muscle	Psoas
27	chr8:126276800-126285800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:126276800-126286000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr8:126277000-126285400	Weak transcription	Thymus	Thymus
30	chr8:126277000-126285800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:126277400-126278400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links