Variant report

Variant	rs7848776
Chromosome Location	chr9:110573303-110573304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12685268	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2417805	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110571600-110573800	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr9:110571800-110573400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:110572000-110573400	Enhancers	HMEC	breast
4	chr9:110572000-110573600	Enhancers	HSMM	muscle
5	chr9:110572200-110573400	Enhancers	HSMMtube	muscle
6	chr9:110572200-110573600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:110572400-110573400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:110572400-110574000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr9:110572600-110574000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:110572800-110578000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:110572800-110578400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:110573000-110573600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr9:110573200-110573400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:110573200-110576400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:110573200-110586400	Weak transcription	Duodenum Smooth Muscle	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links