Variant report
| Variant | rs7850684 |
|---|---|
| Chromosome Location | chr9:13627966-13627967 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10116478 | 0.85[ASN][1000 genomes] |
| rs12684714 | 0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12684745 | 0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12684753 | 0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13296092 | 0.91[ASN][1000 genomes] |
| rs13301366 | 0.93[ASN][1000 genomes] |
| rs16930599 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16930600 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16930601 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs16930603 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2209267 | 0.93[ASN][1000 genomes] |
| rs4740554 | 0.91[CEU][hapmap] |
| rs57466621 | 0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs58134290 | 0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62533172 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62533180 | 0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62533181 | 0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62533182 | 0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62533183 | 0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62533184 | 0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7024350 | 0.93[ASN][1000 genomes] |
| rs7024432 | 0.93[ASN][1000 genomes] |
| rs7026298 | 0.91[CEU][hapmap] |
| rs7042010 | 0.83[CEU][hapmap] |
| rs7855204 | 0.85[ASN][1000 genomes] |
| rs7859899 | 0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017792 | chr9:13529680-13654107 | Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1023684 | chr9:13529680-13744602 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv540067 | chr9:13529680-13744602 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv892587 | chr9:13601074-13732363 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13627200-13628000 | Enhancers | Right Ventricle | heart |
