Variant report

Variant	rs7851582
Chromosome Location	chr9:26902780-26902781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:26889735..26894428-chr9:26898446..26903207,7	K562	blood:
2	chr9:26891080..26893894-chr9:26901411..26904515,3	MCF-7	breast:
3	chr9:26901868..26903390-chr9:26945608..26947352,2	MCF-7	breast:
4	chr9:26900485..26902697-chr9:26902754..26904663,2	K562	blood:
5	chr9:26893520..26896311-chr9:26900470..26903160,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137055	Chromatin interaction
ENSG00000240306	Chromatin interaction
ENSG00000096872	Chromatin interaction
ENSG00000120159	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511793	1.00[ASN][1000 genomes]
rs10812492	1.00[ASN][1000 genomes]
rs10812500	1.00[ASN][1000 genomes]
rs10967594	1.00[ASN][1000 genomes]
rs10967625	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12002260	1.00[ASN][1000 genomes]
rs12342005	1.00[ASN][1000 genomes]
rs12352441	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16910888	1.00[ASN][1000 genomes]
rs16910895	1.00[ASN][1000 genomes]
rs17693955	0.86[EUR][1000 genomes]
rs59274950	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62542667	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62544361	0.86[EUR][1000 genomes]
rs62544362	0.86[EUR][1000 genomes]
rs62544439	1.00[ASN][1000 genomes]
rs62544443	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62544450	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62544451	0.94[EUR][1000 genomes]
rs62544452	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6475948	1.00[ASN][1000 genomes]
rs7023230	0.96[EUR][1000 genomes]
rs7035755	0.88[EUR][1000 genomes]
rs7039400	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040516	1.00[ASN][1000 genomes]
rs7045881	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73436047	0.86[ASN][1000 genomes]
rs7851339	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7851423	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7871097	1.00[ASN][1000 genomes]
rs7871286	1.00[ASN][1000 genomes]
rs7872881	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7851582	IFT74	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26892800-26916200	Weak transcription	Small Intestine	intestine
2	chr9:26893000-26905600	Weak transcription	Lung	lung
3	chr9:26893000-26916000	Weak transcription	Left Ventricle	heart
4	chr9:26893000-26916000	Weak transcription	Pancreas	Pancrea
5	chr9:26893000-26916200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:26893000-26922600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:26893000-26924200	Weak transcription	Esophagus	oesophagus
8	chr9:26893200-26905600	Weak transcription	Ovary	ovary
9	chr9:26893200-26923200	Weak transcription	Right Ventricle	heart
10	chr9:26893400-26903200	Weak transcription	Primary B cells from cord blood	blood
11	chr9:26893400-26904000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:26893400-26904000	Weak transcription	HUVEC	blood vessel
13	chr9:26893400-26904400	Weak transcription	Fetal Brain Male	brain
14	chr9:26893400-26904600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:26893400-26904600	Weak transcription	NH-A	brain
16	chr9:26893400-26904800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr9:26893400-26905200	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:26893400-26905200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:26893400-26905400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:26893400-26905400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:26893400-26905400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:26893400-26905400	Weak transcription	NHDF-Ad	bronchial
23	chr9:26893400-26905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr9:26893400-26905800	Weak transcription	Fetal Stomach	stomach
25	chr9:26893400-26914800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:26893400-26916000	Weak transcription	Fetal Lung	lung
27	chr9:26893400-26916800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:26893400-26925000	Weak transcription	Stomach Mucosa	stomach
29	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
31	chr9:26893600-26903000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr9:26893600-26903000	Weak transcription	A549	lung
33	chr9:26893600-26903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:26893600-26903600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr9:26893600-26903800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr9:26893600-26904000	Weak transcription	Fetal Thymus	thymus
37	chr9:26893600-26904200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:26893600-26904200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr9:26893600-26904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:26893600-26904800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr9:26893600-26905200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:26893600-26905200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr9:26893600-26905200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:26893600-26905200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr9:26893600-26905400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr9:26893600-26905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr9:26893600-26905400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr9:26893600-26905400	Weak transcription	Osteobl	bone
49	chr9:26893600-26905600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:26893600-26905600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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