Variant report

Variant	rs10812492
Chromosome Location	chr9:26909065-26909066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:26907670..26910296-chr9:26959042..26961750,2	K562	blood:
2	chr9:26904433..26907115-chr9:26907974..26909867,2	K562	blood:
3	chr9:26899122..26901033-chr9:26907283..26909966,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10283643	1.00[CHB][hapmap]
rs10511793	0.87[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738762	0.85[TSI][hapmap]
rs10757635	0.85[TSI][hapmap]
rs10812500	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967593	1.00[CHB][hapmap]
rs10967594	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967624	1.00[CHB][hapmap]
rs10967625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10967634	1.00[CHB][hapmap]
rs10967639	1.00[CHB][hapmap]
rs10967640	1.00[CHB][hapmap]
rs1161603	1.00[CHB][hapmap]
rs12001845	1.00[CHB][hapmap]
rs12002260	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12004732	0.80[ASW][hapmap];0.88[CEU][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12338262	0.82[GIH][hapmap]
rs12338678	1.00[CHB][hapmap]
rs12342005	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345094	1.00[CHB][hapmap]
rs12349359	1.00[CHB][hapmap]
rs12352441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16910888	0.94[ASW][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910895	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17693955	0.85[GIH][hapmap]
rs17694121	1.00[CHB][hapmap]
rs17694140	1.00[CHB][hapmap]
rs17694300	1.00[CHB][hapmap]
rs17694306	1.00[CHB][hapmap]
rs17694549	1.00[CHB][hapmap]
rs17755887	1.00[CHB][hapmap]
rs17755911	1.00[CHB][hapmap]
rs2152063	1.00[CHB][hapmap]
rs2991949	1.00[CHB][hapmap]
rs3429	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs596427	1.00[CHB][hapmap]
rs615532	1.00[CHB][hapmap]
rs62542667	0.86[ASN][1000 genomes]
rs62544439	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544444	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6475948	0.93[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019692	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7024415	0.86[EUR][1000 genomes]
rs7032756	0.81[TSI][hapmap]
rs7035755	0.83[GIH][hapmap]
rs7037860	1.00[CHB][hapmap]
rs7039400	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7040516	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045881	0.89[GIH][hapmap]
rs73436047	0.86[ASN][1000 genomes]
rs7851582	1.00[ASN][1000 genomes]
rs7863476	0.84[TSI][hapmap]
rs7868158	0.84[TSI][hapmap]
rs7871097	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871286	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26892800-26916200	Weak transcription	Small Intestine	intestine
2	chr9:26893000-26916000	Weak transcription	Left Ventricle	heart
3	chr9:26893000-26916000	Weak transcription	Pancreas	Pancrea
4	chr9:26893000-26916200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:26893000-26922600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:26893000-26924200	Weak transcription	Esophagus	oesophagus
7	chr9:26893200-26923200	Weak transcription	Right Ventricle	heart
8	chr9:26893400-26914800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:26893400-26916000	Weak transcription	Fetal Lung	lung
10	chr9:26893400-26916800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:26893400-26925000	Weak transcription	Stomach Mucosa	stomach
12	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
14	chr9:26893600-26912200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:26893600-26912400	Weak transcription	Brain Germinal Matrix	brain
16	chr9:26893600-26915400	Weak transcription	Fetal Brain Female	brain
17	chr9:26893600-26915600	Weak transcription	Fetal Kidney	kidney
18	chr9:26893600-26915800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:26893600-26916000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:26893600-26916000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:26893600-26916000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:26896600-26915400	Weak transcription	Brain Angular Gyrus	brain
23	chr9:26896800-26915800	Weak transcription	Colonic Mucosa	Colon
24	chr9:26896800-26915800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr9:26898200-26924400	Weak transcription	Aorta	Aorta
26	chr9:26899200-26921200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr9:26899400-26914800	Weak transcription	HepG2	liver
28	chr9:26899400-26916200	Weak transcription	NHEK	skin
29	chr9:26900600-26916200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:26900800-26930000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:26901000-26913600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:26901200-26935800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:26901600-26916000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:26901600-26920800	Weak transcription	Gastric	stomach
35	chr9:26902800-26909600	Strong transcription	HSMM	muscle
36	chr9:26902800-26936600	Weak transcription	Spleen	Spleen
37	chr9:26903000-26909200	Strong transcription	A549	lung
38	chr9:26903000-26909800	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr9:26903000-26910800	Strong transcription	Placenta	Placenta
40	chr9:26903000-26927800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:26903000-26929800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr9:26903000-26935200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr9:26903200-26928400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr9:26903200-26930000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr9:26903200-26932600	Strong transcription	Dnd41	blood
46	chr9:26903200-26935200	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr9:26903600-26909200	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr9:26903600-26910400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:26903800-26910600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr9:26903800-26915400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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