Variant report

Variant	rs62544444
Chromosome Location	chr9:26931791-26931792
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10812492	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10812500	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967594	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12002260	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12004732	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12342005	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16910888	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16910895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59274950	0.88[ASN][1000 genomes]
rs62544439	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62544443	1.00[ASN][1000 genomes]
rs62544450	1.00[ASN][1000 genomes]
rs62544451	1.00[ASN][1000 genomes]
rs62544452	1.00[ASN][1000 genomes]
rs6475948	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7019692	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7023230	1.00[ASN][1000 genomes]
rs7024415	0.84[EUR][1000 genomes]
rs7035755	0.95[ASN][1000 genomes]
rs7040516	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7045881	1.00[ASN][1000 genomes]
rs7851339	1.00[ASN][1000 genomes]
rs7851423	0.91[ASN][1000 genomes]
rs7866718	0.88[ASN][1000 genomes]
rs7871097	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7871286	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
3	chr9:26901200-26935800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:26902800-26936600	Weak transcription	Spleen	Spleen
5	chr9:26903000-26935200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr9:26903200-26932600	Strong transcription	Dnd41	blood
7	chr9:26903200-26935200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr9:26904600-26935200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:26905400-26938200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:26905800-26937400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:26906200-26936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:26912000-26932600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr9:26912800-26935000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:26913200-26932600	Strong transcription	Primary B cells from cord blood	blood
15	chr9:26914600-26935600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:26915400-26932000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:26916800-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:26917200-26936400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:26917200-26936600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:26920400-26937400	Weak transcription	Fetal Heart	heart
21	chr9:26921600-26934600	Weak transcription	Small Intestine	intestine
22	chr9:26925000-26936200	Weak transcription	Esophagus	oesophagus
23	chr9:26925000-26936400	Weak transcription	Gastric	stomach
24	chr9:26925000-26936600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:26925000-26936600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:26925000-26936600	Weak transcription	Lung	lung
27	chr9:26925800-26934000	Weak transcription	Stomach Mucosa	stomach
28	chr9:26925800-26936400	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:26925800-26945200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:26926000-26936000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:26926000-26936200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:26926000-26936200	Weak transcription	Ovary	ovary
33	chr9:26926000-26936200	Weak transcription	K562	blood
34	chr9:26926000-26936400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr9:26926000-26936400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:26926000-26936400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr9:26926000-26936400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr9:26926000-26936600	Weak transcription	Aorta	Aorta
39	chr9:26926000-26936600	Weak transcription	Left Ventricle	heart
40	chr9:26926000-26936600	Weak transcription	Right Ventricle	heart
41	chr9:26926000-26937600	Weak transcription	Brain Germinal Matrix	brain
42	chr9:26926000-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:26926000-26945200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:26926000-26945400	Weak transcription	HSMMtube	muscle
45	chr9:26926200-26936200	Weak transcription	Colon Smooth Muscle	Colon
46	chr9:26926600-26932400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr9:26926600-26932400	Weak transcription	Hela-S3	cervix
48	chr9:26926600-26936000	Weak transcription	Brain Angular Gyrus	brain
49	chr9:26926600-26937400	Weak transcription	Fetal Lung	lung
50	chr9:26926600-26937800	Weak transcription	Brain Anterior Caudate	brain

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