Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511793	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10812492	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10812500	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs10967594	0.94[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10967625	1.00[JPT][hapmap]
rs12002260	0.86[EUR][1000 genomes]
rs12004732	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs12338262	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12342005	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12352441	1.00[JPT][hapmap]
rs13288517	0.85[ASN][1000 genomes]
rs16910888	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs16910895	0.94[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs17693955	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17840677	0.82[ASN][1000 genomes]
rs62542152	0.82[ASN][1000 genomes]
rs62544361	0.81[ASN][1000 genomes]
rs62544362	0.81[ASN][1000 genomes]
rs62544439	0.87[EUR][1000 genomes]
rs62544444	0.84[EUR][1000 genomes]
rs6475948	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7019692	0.84[EUR][1000 genomes]
rs7038218	0.83[CEU][hapmap]
rs7039400	1.00[JPT][hapmap]
rs7040516	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7871097	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7871286	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv973456	chr9:26805892-26810507	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26808400-26809600	Weak transcription	HMEC	breast
2	chr9:26808400-26810800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:26809200-26810200	Enhancers	NHDF-Ad	bronchial
4	chr9:26809400-26811000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: