The 2.0 version of rSNPBase

Variant report

Variant rs785370
Chromosome Location chr5:115646886-115646887
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115634200-115664400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr5:115639600-115647400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr5:115640200-115647200 ZNF genes & repeats Primary hematopoietic stem cells blood
4 chr5:115640800-115658200 Weak transcription Colonic Mucosa Colon
5 chr5:115641000-115653000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr5:115641400-115651800 Weak transcription Esophagus oesophagus
7 chr5:115641600-115647200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
8 chr5:115642000-115654200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr5:115642400-115653000 Weak transcription Rectal Smooth Muscle rectum
10 chr5:115642600-115654400 Weak transcription Placenta Amnion Placenta Amnion
11 chr5:115642800-115650800 Weak transcription A549 lung
12 chr5:115642800-115655800 Weak transcription Fetal Thymus thymus
13 chr5:115643000-115648200 Weak transcription Fetal Stomach stomach
14 chr5:115643000-115653000 Weak transcription Right Ventricle heart
15 chr5:115643000-115656800 Weak transcription Gastric stomach
16 chr5:115643200-115650200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr5:115643200-115660200 Weak transcription Placenta Placenta
18 chr5:115643200-115664200 Weak transcription Thymus Thymus
19 chr5:115643200-115664800 Weak transcription Pancreas Pancrea
20 chr5:115643200-115669800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr5:115644000-115649000 Weak transcription Primary T helper naive cells fromperipheralblood blood
22 chr5:115644000-115649000 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr5:115644000-115658600 Weak transcription HSMM muscle
24 chr5:115644200-115653200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr5:115644200-115655800 Weak transcription HUVEC blood vessel
26 chr5:115644400-115653000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr5:115644400-115653200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr5:115644400-115654200 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr5:115644400-115664800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr5:115644400-115671800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:115645000-115651200 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr5:115645000-115653000 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr5:115645200-115653000 Weak transcription Lung lung
34 chr5:115645200-115653000 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr5:115645400-115649800 Weak transcription Aorta Aorta
36 chr5:115645400-115650000 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr5:115645400-115650200 Weak transcription Primary monocytes fromperipheralblood blood
38 chr5:115645600-115648800 Weak transcription Adipose Nuclei Adipose
39 chr5:115645600-115648800 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr5:115645600-115649200 Weak transcription Primary B cells from peripheral blood blood
41 chr5:115645600-115650000 Weak transcription Primary B cells from cord blood blood
42 chr5:115645600-115650000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr5:115645600-115651800 Weak transcription Left Ventricle heart
44 chr5:115645600-115652600 Weak transcription Duodenum Mucosa Duodenum
45 chr5:115645600-115653400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr5:115645800-115647000 Strong transcription Primary T cells from cord blood blood
47 chr5:115646000-115653000 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr5:115646400-115653200 Weak transcription Brain Hippocampus Middle brain
49 chr5:115646400-115656000 Weak transcription Fetal Kidney kidney
50 chr5:115646600-115651800 Weak transcription Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015