Variant report

Variant	rs7854455
Chromosome Location	chr9:97318899-97318900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97316754..97318987-chr9:97400777..97403144,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165140	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12684576	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12684591	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684837	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543185	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910061	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41281154	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs514561	0.82[ASN][1000 genomes]
rs558990	0.80[ASN][1000 genomes]
rs57542536	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653483	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653484	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872691	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv972786	chr9:97308737-97320211	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv18072	chr9:97316907-97320096	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97315200-97319200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:97315600-97319200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr9:97316200-97319200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:97316600-97319000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr9:97316600-97319200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:97316800-97319200	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr9:97317200-97321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:97317200-97325400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:97317200-97354000	Weak transcription	Gastric	stomach
10	chr9:97317600-97320800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:97317600-97321000	Weak transcription	Liver	Liver
12	chr9:97317600-97325200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:97317600-97328600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:97317800-97325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:97318200-97324400	Weak transcription	A549	lung
16	chr9:97318200-97327200	Weak transcription	Hela-S3	cervix
17	chr9:97318200-97332000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:97318600-97319800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:97318600-97325400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:97318800-97321000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:97318800-97321200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr9:97318800-97321200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr9:97318800-97321200	Weak transcription	HepG2	liver
24	chr9:97318800-97322400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr9:97318800-97326200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:97318800-97326600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:97318800-97331600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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