Variant report

Variant	rs78545381
Chromosome Location	chr6:166929000-166929001
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166928469..166930058-chr6:167040238..167042581,2	MCF-7	breast:
2	chr6:166928192..166929030-chr6:167027760..167028686,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071242	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1806956	chr6:166928580-166938431	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166899400-166929400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:166909600-166943800	Weak transcription	Colonic Mucosa	Colon
6	chr6:166912200-166931200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:166913000-166929000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:166913000-166952000	Weak transcription	Primary T cells from cord blood	blood
9	chr6:166916200-166954200	Weak transcription	Right Atrium	heart
10	chr6:166916400-166940400	Weak transcription	Fetal Heart	heart
11	chr6:166917200-166932000	Weak transcription	Primary B cells from cord blood	blood
12	chr6:166918400-166931400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:166921200-166930000	Weak transcription	Fetal Intestine Large	intestine
14	chr6:166921400-166930000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:166921400-166930200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:166921400-166943600	Weak transcription	Fetal Lung	lung
17	chr6:166921600-166932000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:166921600-166932000	Weak transcription	Fetal Kidney	kidney
19	chr6:166921600-166937400	Weak transcription	Fetal Brain Male	brain
20	chr6:166922400-166929400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:166923000-166930000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:166923000-166930000	Weak transcription	Esophagus	oesophagus
23	chr6:166923000-166931400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:166923000-166937200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:166923000-166940400	Weak transcription	Aorta	Aorta
26	chr6:166923000-166943800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:166923200-166931200	Weak transcription	Brain Germinal Matrix	brain
28	chr6:166923200-166932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:166923200-166940200	Weak transcription	Ovary	ovary
30	chr6:166923200-166943200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:166923200-166943800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:166923600-166936800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:166923800-166930000	Weak transcription	Placenta	Placenta
34	chr6:166923800-166944400	Weak transcription	Psoas Muscle	Psoas
35	chr6:166923800-166953000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr6:166925000-166940400	Weak transcription	Adipose Nuclei	Adipose
37	chr6:166926200-166929000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr6:166926200-166930400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:166926200-166930400	Strong transcription	Fetal Stomach	stomach
40	chr6:166926400-166929200	Strong transcription	Fetal Muscle Leg	muscle
41	chr6:166927000-166929000	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:166927000-166930400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:166927200-166938000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:166927600-166929400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:166927600-166929600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:166927600-166929600	Enhancers	HMEC	breast
47	chr6:166927600-166930400	Genic enhancers	Lung	lung
48	chr6:166927800-166929000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:166927800-166929000	Strong transcription	Liver	Liver
50	chr6:166927800-166930400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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