Variant report
| Variant | rs7854744 |
|---|---|
| Chromosome Location | chr9:93407912-93407913 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:93080669..93081254-chr9:93407694..93408434,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| DIRAS2 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1017754 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1017755 | 0.95[ASN][1000 genomes] |
| rs10761392 | 0.94[ASN][1000 genomes] |
| rs10993617 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10993624 | 0.82[EUR][1000 genomes] |
| rs11793456 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1331493 | 0.83[EUR][1000 genomes] |
| rs1331502 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1331503 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs1360471 | 0.93[ASN][1000 genomes] |
| rs1360474 | 0.88[ASW][hapmap];0.81[CEU][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1412005 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1831521 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2290892 | 0.87[AMR][1000 genomes] |
| rs4744473 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4744474 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7030418 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7848810 | 0.88[ASW][hapmap];0.85[CEU][hapmap];0.86[TSI][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7859015 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041278 | chr9:92965701-93560454 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv893566 | chr9:93209923-93439259 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046989 | chr9:93353987-93800416 | Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv482757 | chr9:93356095-93543903 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:93407800-93410800 | Enhancers | Thymus | Thymus |
