Variant report

Variant	rs7855398
Chromosome Location	chr9:85039160-85039161
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10512126	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341668	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571634	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7467072	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7866587	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85036800-85039200	Weak transcription	Aorta	Aorta
2	chr9:85037400-85039600	Enhancers	Colonic Mucosa	Colon
3	chr9:85037400-85040400	Enhancers	Fetal Intestine Large	intestine
4	chr9:85037400-85040400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr9:85037400-85040600	Enhancers	Fetal Intestine Small	intestine
6	chr9:85037800-85039400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr9:85037800-85040600	Enhancers	Stomach Mucosa	stomach
8	chr9:85038000-85039600	Enhancers	Duodenum Mucosa	Duodenum
9	chr9:85038200-85039800	Enhancers	Gastric	stomach
10	chr9:85038400-85039600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr9:85038800-85039800	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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