Variant report

Variant	rs7855950
Chromosome Location	chr9:10409555-10409556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10732321	0.86[CEU][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10733206	0.86[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10733207	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10738163	0.86[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756031	0.85[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756032	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10809082	0.86[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10809083	0.86[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10809084	0.85[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10809086	0.85[CEU][hapmap]
rs1323484	0.86[CEU][hapmap]
rs1323486	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1359090	0.86[CEU][hapmap]
rs1359101	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs1407914	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1407916	0.86[CEU][hapmap];0.82[JPT][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1407917	0.86[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1407919	0.85[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1407921	0.86[CEU][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1407922	0.86[CEU][hapmap]
rs1407926	0.88[CHB][hapmap];0.91[YRI][hapmap]
rs1535659	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1535660	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1853451	0.86[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1853452	0.86[CEU][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2382205	0.86[CEU][hapmap]
rs2382208	0.86[CEU][hapmap]
rs4741032	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs620558	0.88[CHB][hapmap]
rs6474545	1.00[CEU][hapmap]
rs7023488	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs7028984	0.86[CEU][hapmap]
rs7040498	1.00[CEU][hapmap]
rs7873950	0.85[CEU][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs942156	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1021630	chr9:10336415-10881683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv892315	chr9:10338320-10484849	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892316	chr9:10348091-10555358	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv466161	chr9:10365060-10557349	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv613378	chr9:10365060-10557349	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1018972	chr9:10365083-10504217	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv530932	chr9:10381123-11173149	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv6478	chr9:10382390-10426916	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv613380	chr9:10391459-10424164	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links