Variant report

Variant	rs7857813
Chromosome Location	chr9:100860789-100860790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100858708..100861627-chr9:100861648..100863594,2	MCF-7	breast:
2	chr9:100817590..100820574-chr9:100860322..100862706,3	K562	blood:
3	chr9:100848562..100851460-chr9:100859656..100862171,2	MCF-7	breast:
4	chr9:100860467..100862654-chr9:100943409..100946106,2	K562	blood:
5	chr9:100860198..100865318-chr9:100878989..100883996,6	MCF-7	breast:
6	chr9:100854857..100858216-chr9:100859815..100862385,4	K562	blood:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction
ENSG00000106785	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13049	0.86[AMR][1000 genomes]
rs2181582	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2417726	0.82[AMR][1000 genomes]
rs2417729	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4237190	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4412474	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4742714	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743163	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7021804	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7042169	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7872652	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs942167	0.86[AMR][1000 genomes]
rs9918951	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100839400-100861800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr9:100846000-100862600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr9:100846200-100862200	Strong transcription	Duodenum Mucosa	Duodenum
4	chr9:100846400-100861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:100847400-100869400	Weak transcription	A549	lung
6	chr9:100847600-100867000	Weak transcription	Hela-S3	cervix
7	chr9:100850400-100861000	Weak transcription	HMEC	breast
8	chr9:100850400-100868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:100850400-100880400	Weak transcription	HSMM	muscle
10	chr9:100850600-100863000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:100850600-100864400	Weak transcription	Brain Germinal Matrix	brain
12	chr9:100850600-100875400	Weak transcription	NHLF	lung
13	chr9:100850600-100880600	Weak transcription	Fetal Lung	lung
14	chr9:100851000-100862800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:100851400-100861200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:100852000-100861600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:100853000-100862400	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr9:100853200-100862000	Strong transcription	Dnd41	blood
19	chr9:100853400-100861800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr9:100853600-100861800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
21	chr9:100854400-100862000	Strong transcription	Fetal Intestine Large	intestine
22	chr9:100854600-100870800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr9:100854800-100863800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:100854800-100870800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:100855000-100862000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr9:100855000-100864400	Weak transcription	Brain Angular Gyrus	brain
27	chr9:100855000-100866800	Weak transcription	Placenta	Placenta
28	chr9:100855000-100868200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:100855200-100862000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr9:100855200-100864400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:100855200-100864400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:100855400-100862000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr9:100855600-100864000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr9:100855600-100864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr9:100856000-100861000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:100856200-100861800	Strong transcription	Spleen	Spleen
37	chr9:100856400-100861000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:100856400-100862000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr9:100856400-100862400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr9:100856600-100862400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:100856600-100862400	Strong transcription	Fetal Stomach	stomach
42	chr9:100856800-100861600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr9:100856800-100861800	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr9:100857000-100862400	Genic enhancers	Fetal Thymus	thymus
45	chr9:100857200-100862400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:100857800-100869400	Weak transcription	Left Ventricle	heart
47	chr9:100858000-100861600	Weak transcription	Stomach Mucosa	stomach
48	chr9:100858000-100862000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr9:100858000-100862000	Weak transcription	Small Intestine	intestine
50	chr9:100858000-100862200	Weak transcription	Adipose Nuclei	Adipose

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