Variant report

Variant	rs7858684
Chromosome Location	chr9:9349832-9349833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10114510	0.95[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs10125868	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs10125869	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs10511523	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs10816094	0.84[CHB][hapmap]
rs1332795	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1332796	0.90[CHB][hapmap];0.80[CHD][hapmap];0.84[ASN][1000 genomes]
rs1332797	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1332800	0.90[CHB][hapmap]
rs1332802	0.94[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap]
rs1332803	0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap]
rs1332806	0.95[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap]
rs1332812	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1333121	0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1412880	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1412881	0.95[CHB][hapmap];0.82[CHD][hapmap];0.84[ASN][1000 genomes]
rs1547287	0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap]
rs1855217	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs1889106	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1889108	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2001	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2039419	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2065511	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs2065512	0.95[CHB][hapmap];0.82[CHD][hapmap];0.84[ASN][1000 genomes]
rs2151325	0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap]
rs2225596	0.95[CHB][hapmap];0.85[CHD][hapmap];0.84[ASN][1000 genomes]
rs2780071	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs2780072	0.90[CHB][hapmap]
rs2780073	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs2780075	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs2780076	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs3904501	0.90[CHB][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap]
rs4740976	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs4742585	0.90[CHB][hapmap];0.80[CHD][hapmap];0.83[ASN][1000 genomes]
rs4742586	0.83[ASN][1000 genomes]
rs7019201	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs7047537	0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7850556	0.85[CHB][hapmap]
rs9299094	0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap]
rs9407420	0.88[ASN][1000 genomes]
rs950196	0.90[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv892258	chr9:9304839-9455711	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv520832	chr9:9326805-9364637	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1024452	chr9:9339770-9355896	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1018493	chr9:9348853-9395912	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7858684	RLN1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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