Variant report

Variant	rs78600093
Chromosome Location	chr18:45398405-45398406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45396878..45399642-chr18:45401844..45403752,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057722	chr18:45343965-45401360	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1058673	chr18:45360012-45404492	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1059186	chr18:45360012-45407405	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1057525	chr18:45368587-45407405	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1064282	chr18:45369857-45404768	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1063859	chr18:45372027-45404492	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1057298	chr18:45374239-45404428	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1062731	chr18:45374239-45404768	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1065607	chr18:45374658-45404751	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1059619	chr18:45384301-45401360	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1066646	chr18:45384301-45406242	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1057028	chr18:45384301-45410482	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1057181	chr18:45387616-45401360	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1063791	chr18:45387616-45404428	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1059120	chr18:45387616-45404768	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1062089	chr18:45387616-45407754	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1064124	chr18:45387616-45410760	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv1059902	chr18:45387723-45401360	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv1057124	chr18:45387723-45404428	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv1064655	chr18:45387723-45406182	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv1066562	chr18:45388621-45401360	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv1067147	chr18:45388621-45404768	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1065234	chr18:45389554-45407966	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv1057307	chr18:45394077-45404768	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv1067255	chr18:45394077-45407181	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
26	nsv1057072	chr18:45395377-45410041	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
27	nsv1064892	chr18:45397130-45407820	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45345400-45400200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:45366600-45408200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr18:45382200-45420400	Weak transcription	Right Ventricle	heart
4	chr18:45384200-45398800	Weak transcription	Pancreas	Pancrea
5	chr18:45384200-45421200	Weak transcription	Gastric	stomach
6	chr18:45384200-45423000	Weak transcription	Lung	lung
7	chr18:45384400-45400200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:45384400-45401200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr18:45384400-45410200	Weak transcription	Aorta	Aorta
10	chr18:45384400-45419600	Weak transcription	K562	blood
11	chr18:45384400-45423000	Weak transcription	Spleen	Spleen
12	chr18:45384600-45399000	Weak transcription	Right Atrium	heart
13	chr18:45384800-45400200	Weak transcription	Brain Substantia Nigra	brain
14	chr18:45384800-45407000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr18:45384800-45418400	Weak transcription	Fetal Brain Male	brain
16	chr18:45385400-45400000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr18:45385600-45400000	Weak transcription	Brain Hippocampus Middle	brain
18	chr18:45385600-45420800	Weak transcription	Brain Germinal Matrix	brain
19	chr18:45386400-45401800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr18:45386800-45420400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr18:45386800-45420600	Weak transcription	Esophagus	oesophagus
22	chr18:45387000-45407200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:45387000-45407200	Weak transcription	Fetal Muscle Leg	muscle
24	chr18:45387000-45408200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr18:45387000-45408400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr18:45387200-45398800	Weak transcription	Left Ventricle	heart
27	chr18:45387600-45408200	Weak transcription	Fetal Stomach	stomach
28	chr18:45389000-45410200	Weak transcription	Psoas Muscle	Psoas
29	chr18:45390000-45413600	Weak transcription	Fetal Heart	heart
30	chr18:45390400-45399000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr18:45390400-45400400	Weak transcription	Brain Anterior Caudate	brain
32	chr18:45390400-45408200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr18:45390400-45408400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr18:45390400-45410000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr18:45390600-45410400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr18:45390600-45419600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr18:45391000-45399800	Weak transcription	HSMMtube	muscle
38	chr18:45391000-45418400	Weak transcription	HUVEC	blood vessel
39	chr18:45391200-45399800	Weak transcription	Colonic Mucosa	Colon
40	chr18:45391200-45416400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr18:45391400-45406600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr18:45391800-45405200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr18:45394000-45406200	Weak transcription	Fetal Intestine Large	intestine
44	chr18:45394600-45414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr18:45394800-45407800	Weak transcription	Osteobl	bone
46	chr18:45395000-45398800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr18:45395000-45407000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr18:45395200-45407000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr18:45395400-45399000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr18:45395400-45399000	Weak transcription	Thymus	Thymus

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