Variant report

Variant	rs7860653
Chromosome Location	chr9:110512551-110512552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110503474..110505849-chr9:110510284..110512558,2	MCF-7	breast:
2	chr9:110506325..110509127-chr9:110512210..110514909,2	MCF-7	breast:
3	chr3:187870942..187871803-chr9:110511912..110512583,2	Hela-S3	cervix:
4	chr9:110511283..110513758-chr9:110751617..110753251,2	MCF-7	breast:
5	chr9:110512265..110514860-chr9:110532289..110535140,2	K562	blood:
6	chr9:110246450..110254025-chr9:110510483..110522079,28	MCF-7	breast:
7	chr9:110264744..110266613-chr9:110510927..110513657,2	MCF-7	breast:
8	chr9:110248851..110253829-chr9:110506998..110514501,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145012	Chromatin interaction
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10118459	0.86[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10733564	0.81[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[ASN][1000 genomes]
rs1357574	0.93[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1411357	0.86[MKK][hapmap]
rs2177433	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4978559	0.82[AMR][1000 genomes]
rs4979370	0.86[MKK][hapmap]
rs6477598	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028227	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7044046	0.82[AMR][1000 genomes]
rs944174	0.98[ASN][1000 genomes]
rs944175	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110505200-110514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:110507800-110513000	Weak transcription	GM12878-XiMat	blood
3	chr9:110509400-110515600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:110509800-110512800	Enhancers	Ovary	ovary
5	chr9:110510000-110514200	Enhancers	Brain Germinal Matrix	brain
6	chr9:110510400-110512800	Enhancers	Right Ventricle	heart
7	chr9:110510400-110514600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:110510600-110514600	Enhancers	Adipose Nuclei	Adipose
9	chr9:110510600-110514600	Enhancers	Brain Hippocampus Middle	brain
10	chr9:110510600-110514600	Enhancers	Brain Substantia Nigra	brain
11	chr9:110510800-110512600	Enhancers	Aorta	Aorta
12	chr9:110510800-110514000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr9:110510800-110514600	Enhancers	Placenta	Placenta
14	chr9:110510800-110514800	Enhancers	Fetal Muscle Leg	muscle
15	chr9:110510800-110515200	Enhancers	HMEC	breast
16	chr9:110511000-110513000	Enhancers	Brain Cingulate Gyrus	brain
17	chr9:110511000-110514400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:110511200-110513600	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:110511200-110514400	Enhancers	Brain Anterior Caudate	brain
20	chr9:110511200-110514400	Enhancers	Fetal Lung	lung
21	chr9:110511400-110512600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:110511400-110513000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:110511400-110513200	Enhancers	Brain Angular Gyrus	brain
24	chr9:110511400-110513400	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr9:110511400-110513600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:110511400-110514400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:110511400-110514600	Enhancers	Fetal Brain Male	brain
28	chr9:110511400-110514800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:110511400-110514800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:110511400-110514800	Enhancers	HSMM	muscle
31	chr9:110511400-110514800	Enhancers	NHLF	lung
32	chr9:110511600-110513000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr9:110511600-110513000	Enhancers	Duodenum Mucosa	Duodenum
34	chr9:110511600-110514600	Enhancers	NHDF-Ad	bronchial
35	chr9:110511600-110514800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr9:110511600-110514800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:110511600-110514800	Enhancers	HSMMtube	muscle
38	chr9:110511600-110515400	Enhancers	Colon Smooth Muscle	Colon
39	chr9:110511800-110512800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr9:110511800-110512800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr9:110511800-110513000	Flanking Active TSS	Hela-S3	cervix
42	chr9:110511800-110513000	Enhancers	NHEK	skin
43	chr9:110511800-110513200	Enhancers	K562	blood
44	chr9:110511800-110514000	Enhancers	Fetal Brain Female	brain
45	chr9:110511800-110514000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr9:110511800-110514600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr9:110511800-110514600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:110511800-110514600	Enhancers	Fetal Muscle Trunk	muscle
49	chr9:110511800-110514600	Enhancers	Rectal Smooth Muscle	rectum
50	chr9:110511800-110514600	Enhancers	NH-A	brain

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