Variant report

Variant	rs7861901
Chromosome Location	chr9:72198899-72198900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72198561..72201116-chr9:72205878..72207439,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11139473	0.82[ASN][1000 genomes]
rs12379484	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72719025	0.82[ASN][1000 genomes]
rs72719028	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7853648	0.89[ASN][1000 genomes]
rs7860931	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72180400-72208400	Weak transcription	Gastric	stomach
2	chr9:72186200-72200800	Weak transcription	HSMMtube	muscle
3	chr9:72187400-72204800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:72189400-72199200	Weak transcription	NH-A	brain
5	chr9:72193200-72204400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:72193400-72200200	Weak transcription	Right Ventricle	heart
7	chr9:72195400-72200400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:72195400-72200600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:72195800-72208200	Weak transcription	Fetal Lung	lung
10	chr9:72196000-72204800	Weak transcription	Fetal Brain Male	brain
11	chr9:72196200-72204800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:72196400-72199400	Enhancers	Fetal Heart	heart
13	chr9:72196400-72201000	Enhancers	HUVEC	blood vessel
14	chr9:72197200-72201000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:72197400-72199000	Enhancers	Right Atrium	heart
16	chr9:72197400-72199200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:72197800-72199400	Weak transcription	Osteobl	bone
18	chr9:72198000-72199000	Enhancers	Brain Germinal Matrix	brain
19	chr9:72198200-72199400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:72198200-72199800	Weak transcription	NHEK	skin
21	chr9:72198400-72199000	Weak transcription	Liver	Liver
22	chr9:72198600-72200800	Enhancers	NHDF-Ad	bronchial
23	chr9:72198800-72199600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr9:72198800-72200400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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