Variant report

Variant	rs7862325
Chromosome Location	chr9:117567137-117567138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117565521..117568047-chr9:117568256..117570338,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181634	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11793394	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1407308	0.87[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17219926	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7030574	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866570	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117562000-117568000	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:117562200-117568000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:117562400-117567600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:117562400-117568000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:117564800-117568000	Enhancers	Placenta	Placenta
6	chr9:117565000-117568000	Weak transcription	Right Atrium	heart
7	chr9:117565000-117569400	Enhancers	Fetal Lung	lung
8	chr9:117565200-117567800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:117565200-117568000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:117565200-117569800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr9:117565400-117568200	Enhancers	NHDF-Ad	bronchial
12	chr9:117565400-117568600	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr9:117565600-117568000	Enhancers	Stomach Mucosa	stomach
14	chr9:117565800-117567200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr9:117565800-117567400	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr9:117565800-117567400	Enhancers	Ovary	ovary
17	chr9:117565800-117568000	Enhancers	Colonic Mucosa	Colon
18	chr9:117565800-117568000	Enhancers	Osteobl	bone
19	chr9:117565800-117568800	Enhancers	NHLF	lung
20	chr9:117565800-117569000	Enhancers	HepG2	liver
21	chr9:117566000-117567200	Flanking Active TSS	Fetal Kidney	kidney
22	chr9:117566000-117567600	Flanking Active TSS	A549	lung
23	chr9:117566000-117567800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:117566000-117568000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:117566000-117568000	Weak transcription	Liver	Liver
26	chr9:117566000-117568400	Flanking Active TSS	Fetal Intestine Large	intestine
27	chr9:117566000-117568400	Flanking Active TSS	HUVEC	blood vessel
28	chr9:117566000-117569000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:117566200-117567400	Enhancers	NHEK	skin
30	chr9:117566200-117568000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:117566200-117568000	Weak transcription	Adipose Nuclei	Adipose
32	chr9:117566200-117568000	Enhancers	Hela-S3	cervix
33	chr9:117566200-117568000	Enhancers	HMEC	breast
34	chr9:117566200-117568800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:117566200-117569000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:117566200-117569600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:117566400-117567800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:117566400-117568000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr9:117566400-117568000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr9:117566400-117568000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:117566400-117569000	Enhancers	HSMM	muscle
42	chr9:117566400-117569200	Enhancers	NH-A	brain
43	chr9:117566600-117567800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr9:117566600-117567800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr9:117566600-117568000	Weak transcription	Spleen	Spleen
46	chr9:117566600-117568000	Enhancers	HSMMtube	muscle
47	chr9:117566600-117568200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:117566600-117568200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:117566600-117568400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:117566600-117569000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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