Variant report

Variant	rs1407308
Chromosome Location	chr9:117570223-117570224
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11793394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795369	0.85[ASN][1000 genomes]
rs17219926	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885386	0.85[ASN][1000 genomes]
rs3181354	1.00[JPT][hapmap]
rs4979465	0.85[ASN][1000 genomes]
rs55775610	0.90[ASN][1000 genomes]
rs7030574	1.00[CEU][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7048073	0.85[ASN][1000 genomes]
rs726658	1.00[JPT][hapmap]
rs7847158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7862325	0.87[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7866570	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874896	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117567800-117572000	Enhancers	Primary B cells from peripheral blood	blood
2	chr9:117568400-117571200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:117568800-117572800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:117568800-117576200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:117569000-117571600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:117569000-117573000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:117569000-117573800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:117569200-117573600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:117569400-117571600	Enhancers	Primary B cells from cord blood	blood
10	chr9:117569600-117573600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:117569800-117573400	Weak transcription	HMEC	breast
12	chr9:117569800-117573600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:117569800-117582600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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