Variant report

Variant	rs726658
Chromosome Location	chr9:117696266-117696267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10982521	1.00[JPT][hapmap]
rs11793394	1.00[JPT][hapmap]
rs11795369	0.82[AFR][1000 genomes]
rs1407308	1.00[JPT][hapmap]
rs1513	1.00[JPT][hapmap]
rs2418326	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3181354	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4979474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7847158	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv6680	chr9:117690388-117699304	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117693200-117697200	Weak transcription	Adipose Nuclei	Adipose
2	chr9:117693600-117697200	Weak transcription	Right Atrium	heart
3	chr9:117693800-117697800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:117693800-117698800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr9:117694000-117698600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr9:117694200-117699600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:117694400-117698800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:117694400-117700200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:117694800-117696600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:117695000-117698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:117695000-117700200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:117695200-117700800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:117695600-117701000	Weak transcription	Thymus	Thymus
14	chr9:117696000-117696600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:117696200-117698600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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