Variant report

Variant	rs55775610
Chromosome Location	chr9:117560982-117560983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117560512..117564321-chr9:117564401..117568664,4	MCF-7	breast:
2	chr9:117551978..117554361-chr9:117558234..117561272,3	K562	blood:

Variant related genes	Relation type
ENSG00000181634	Chromatin interaction

rs_ID	r²[population]
rs11793394	0.90[ASN][1000 genomes]
rs1407308	0.90[ASN][1000 genomes]
rs17219926	0.90[ASN][1000 genomes]
rs72756541	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7847158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866570	0.90[ASN][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117542000-117561800	Weak transcription	Pancreas	Pancrea
2	chr9:117542400-117561200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:117545400-117561400	Weak transcription	Gastric	stomach
4	chr9:117547800-117561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:117548000-117565400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:117548400-117561800	Weak transcription	Esophagus	oesophagus
7	chr9:117552800-117561200	Weak transcription	Placenta	Placenta
8	chr9:117553000-117561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:117553000-117561800	Weak transcription	Lung	lung
10	chr9:117553400-117565200	Weak transcription	HUVEC	blood vessel
11	chr9:117559600-117564400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:117560200-117561000	Weak transcription	Fetal Kidney	kidney
13	chr9:117560200-117561400	Enhancers	A549	lung
14	chr9:117560200-117562400	Enhancers	Fetal Stomach	stomach
15	chr9:117560400-117562000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:117560400-117562200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:117560400-117562400	Enhancers	Fetal Lung	lung
18	chr9:117560400-117562800	Enhancers	Fetal Intestine Large	intestine
19	chr9:117560600-117562400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:117560800-117561400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:117560800-117561800	Enhancers	Fetal Intestine Small	intestine
22	chr9:117560800-117562000	Enhancers	NHEK	skin
23	chr9:117560800-117562200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr9:117560800-117562400	Enhancers	Duodenum Mucosa	Duodenum
25	chr9:117560800-117562600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr9:117560800-117562600	Enhancers	HMEC	breast

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