Variant report

Variant	rs7862736
Chromosome Location	chr9:96249848-96249849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96248820..96250684-chr9:96255799..96258276,2	MCF-7	breast:
2	chr9:96212792..96216621-chr9:96248855..96253856,5	MCF-7	breast:
3	chr9:96248016..96251380-chr9:96259927..96262755,3	MCF-7	breast:
4	chr9:96244628..96248113-chr9:96249700..96253077,4	MCF-7	breast:
5	chr9:96248658..96250706-chr9:96258145..96259723,2	K562	blood:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57604237	1.00[EUR][1000 genomes]
rs58515648	1.00[EUR][1000 genomes]
rs59257911	1.00[EUR][1000 genomes]
rs59436086	1.00[EUR][1000 genomes]
rs7031658	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7040489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045518	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7047509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7859645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7863115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867466	1.00[EUR][1000 genomes]
rs7874734	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
3	chr9:96231600-96256400	Weak transcription	NH-A	brain
4	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
7	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:96234000-96250000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:96234000-96254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:96235800-96253600	Weak transcription	Stomach Mucosa	stomach
12	chr9:96238400-96252800	Strong transcription	Placenta	Placenta
13	chr9:96238400-96258400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:96238800-96256400	Weak transcription	Fetal Kidney	kidney
15	chr9:96239400-96251800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
17	chr9:96240200-96255800	Weak transcription	Fetal Brain Female	brain
18	chr9:96241600-96262400	Strong transcription	Fetal Thymus	thymus
19	chr9:96241800-96259800	Strong transcription	Dnd41	blood
20	chr9:96242600-96256400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:96242800-96250400	Weak transcription	HMEC	breast
22	chr9:96242800-96251600	Weak transcription	HUVEC	blood vessel
23	chr9:96242800-96254800	Weak transcription	Brain Angular Gyrus	brain
24	chr9:96242800-96256800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:96243200-96259800	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:96243400-96251400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:96243400-96251800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:96243400-96256400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:96243400-96258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr9:96244800-96262000	Strong transcription	Primary T cells from cord blood	blood
33	chr9:96245000-96253400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:96245200-96250600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:96245200-96256200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr9:96245400-96250000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:96245400-96256400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:96246000-96252600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:96246200-96251600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:96246200-96255200	Strong transcription	Fetal Intestine Small	intestine
41	chr9:96246400-96251800	Strong transcription	HSMM	muscle
42	chr9:96246400-96253400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:96246800-96250600	Weak transcription	Right Atrium	heart
44	chr9:96246800-96251600	Weak transcription	Right Ventricle	heart
45	chr9:96246800-96255200	Weak transcription	Ovary	ovary
46	chr9:96246800-96256400	Weak transcription	Aorta	Aorta
47	chr9:96246800-96256400	Weak transcription	Esophagus	oesophagus
48	chr9:96247400-96250400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr9:96247600-96251600	Weak transcription	Brain Germinal Matrix	brain
50	chr9:96247600-96253200	Weak transcription	Brain Substantia Nigra	brain

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