Variant report

Variant	rs7874734
Chromosome Location	chr9:96220442-96220443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96220347..96222637-chr9:96242128..96243998,2	MCF-7	breast:
2	chr9:96220139..96221974-chr9:96287391..96289442,3	MCF-7	breast:
3	chr9:95963731..95965841-chr9:96218662..96220646,2	MCF-7	breast:
4	chr9:96219136..96220997-chr9:96281166..96283983,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57604237	1.00[EUR][1000 genomes]
rs58515648	1.00[EUR][1000 genomes]
rs59257911	1.00[EUR][1000 genomes]
rs7031658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7040489	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045400	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045518	1.00[AMR][1000 genomes]
rs7047509	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7859645	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7862736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7863115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867466	1.00[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96220600	Weak transcription	Gastric	stomach
2	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:96216400-96220600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96216400-96220600	Weak transcription	Esophagus	oesophagus
5	chr9:96216400-96221000	Weak transcription	Aorta	Aorta
6	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:96216600-96223400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:96216600-96224000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr9:96216800-96220600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:96216800-96220600	Weak transcription	Placenta	Placenta
13	chr9:96216800-96220600	Weak transcription	Ovary	ovary
14	chr9:96216800-96220600	Weak transcription	Right Ventricle	heart
15	chr9:96216800-96220800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr9:96216800-96222200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:96216800-96222400	Enhancers	HepG2	liver
18	chr9:96216800-96225000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
20	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
21	chr9:96217000-96220600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:96217000-96220600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:96217000-96220600	Weak transcription	Fetal Kidney	kidney
24	chr9:96217000-96220600	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:96217000-96221000	Weak transcription	Brain Anterior Caudate	brain
26	chr9:96217000-96221200	Weak transcription	Brain Substantia Nigra	brain
27	chr9:96217000-96222200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:96217000-96226200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:96217200-96220600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr9:96217200-96221200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:96217200-96221400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
33	chr9:96217400-96220600	Weak transcription	Right Atrium	heart
34	chr9:96217400-96220800	Weak transcription	Fetal Lung	lung
35	chr9:96217400-96221400	Weak transcription	HSMMtube	muscle
36	chr9:96217400-96222800	Weak transcription	Thymus	Thymus
37	chr9:96217400-96223200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:96217400-96230800	Weak transcription	HSMM	muscle
40	chr9:96217600-96220600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:96217600-96221200	Weak transcription	Brain Angular Gyrus	brain
42	chr9:96217600-96221400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:96217600-96221600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr9:96217600-96223000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:96217600-96226000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr9:96217800-96221000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
48	chr9:96218000-96221800	Weak transcription	Primary B cells from cord blood	blood
49	chr9:96218000-96222000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:96218000-96222400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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