Variant report

Variant	rs7866456
Chromosome Location	chr9:140339917-140339918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr9:140339805-140340153	GM12878	blood:	n/a	n/a
2	CTCF	chr9:140339860-140340010	K562	blood:	n/a	chr9:140339894-140339910
3	CTCF	chr9:140339800-140339950	HCFaa	heart:	n/a	chr9:140339894-140339910
4	ZNF143	chr9:140339744-140340097	H1-hESC	embryonic stem cell:	n/a	chr9:140340057-140340075
5	CTCF	chr9:140339735-140340040	GM13977	blood:	n/a	chr9:140339894-140339910
6	JUND	chr9:140339780-140340112	H1-hESC	embryonic stem cell:	n/a	chr9:140339953-140339965 chr9:140339953-140339964 chr9:140339958-140339970 chr9:140339955-140339963
7	CTCF	chr9:140339781-140340055	ProgFib	skin:	n/a	chr9:140339894-140339910
8	POLR2A	chr9:140339633-140340111	PFSK-1	brain:	n/a	n/a
9	RAD21	chr9:140339715-140340060	K562	blood:	n/a	n/a
10	ZBTB7A	chr9:140339749-140340121	K562	blood:	n/a	n/a
11	CTCF	chr9:140339820-140339970	RPTEC	kidney:	n/a	chr9:140339894-140339910
12	CTCF	chr9:140339840-140339990	AG04449	skin:	n/a	chr9:140339894-140339910
13	CHD2	chr9:140339649-140340057	HepG2	liver:	n/a	n/a
14	CTCF	chr9:140339840-140339990	GM12869	blood:	n/a	chr9:140339894-140339910
15	NFATC1	chr9:140339714-140340192	GM12878	blood:	n/a	n/a
16	CTCF	chr9:140339860-140340010	HRPEpiC	eye:	n/a	chr9:140339894-140339910
17	CTCF	chr9:140339860-140340010	HVMF	connective:	n/a	chr9:140339894-140339910
18	CTCF	chr9:140339820-140339970	HepG2	liver:	n/a	chr9:140339894-140339910
19	CTCF	chr9:140339840-140339990	HPAF	blood vessel:	n/a	chr9:140339894-140339910
20	CTCF	chr9:140339860-140340010	GM12871	blood:	n/a	chr9:140339894-140339910
21	YY1	chr9:140339761-140340044	K562	blood:	n/a	n/a
22	YY1	chr9:140339689-140340262	HepG2	liver:	n/a	chr9:140340183-140340202 chr9:140340185-140340207 chr9:140340188-140340196 chr9:140340127-140340138
23	CTCF	chr9:140339880-140340030	GM12872	blood:	n/a	chr9:140339894-140339910
24	POLR2A	chr9:140339640-140340863	HepG2	liver:	n/a	n/a
25	MAX	chr9:140339673-140340111	Hela-S3	cervix:	n/a	n/a
26	CTCF	chr9:140339840-140339990	MCF-7	breast:	n/a	chr9:140339894-140339910
27	CTCF	chr9:140339780-140339930	BJ	skin:	n/a	chr9:140339894-140339910
28	POLR2A	chr9:140339872-140340244	ECC-1	luminal epithelium:	n/a	n/a
29	ZNF384	chr9:140339610-140340090	K562	blood:	n/a	n/a
30	POLR2A	chr9:140339597-140343078	HepG2	liver:	n/a	n/a
31	MYC	chr9:140339737-140340078	K562	blood:	n/a	n/a
32	CTCF	chr9:140339820-140339970	GM12866	blood:	n/a	chr9:140339894-140339910
33	CTCF	chr9:140339820-140339970	HRPEpiC	eye:	n/a	chr9:140339894-140339910
34	POU2F2	chr9:140339729-140340278	GM12891	blood:	n/a	n/a
35	MBD4	chr9:140339497-140340089	HepG2	liver:	n/a	n/a
36	FOSL1	chr9:140339753-140340111	K562	blood:	n/a	chr9:140339953-140339965 chr9:140339953-140339964 chr9:140339958-140339970 chr9:140339955-140339963
37	CTCF	chr9:140339820-140339970	HCT-116	colon:	n/a	chr9:140339894-140339910
38	RCOR1	chr9:140339712-140340139	Hela-S3	cervix:	n/a	n/a
39	CTCF	chr9:140339820-140339970	GM06990	blood:	n/a	chr9:140339894-140339910
40	CTCF	chr9:140339788-140340032	GM20000	blood:	n/a	chr9:140339894-140339910
41	RAD21	chr9:140339566-140340198	A549	lung:	n/a	n/a
42	CTCF	chr9:140339721-140339968	A549	lung:	n/a	chr9:140339894-140339910
43	TCF12	chr9:140339600-140340247	A549	lung:	n/a	n/a
44	FOS	chr9:140339740-140340153	MCF10A-Er-Src	breast:	n/a	chr9:140339953-140339965 chr9:140339953-140339964 chr9:140339958-140339970 chr9:140339955-140339963
45	CTCF	chr9:140339840-140339990	SAEC	small airway:	n/a	chr9:140339894-140339910
46	ARID3A	chr9:140339748-140340324	HepG2	liver:	n/a	n/a
47	BATF	chr9:140339791-140340143	GM12878	blood:	n/a	n/a
48	POLR2A	chr9:140339742-140342780	A549	lung:	n/a	n/a
49	CTCF	chr9:140339764-140340057	GM19239	blood:	n/a	chr9:140339894-140339910
50	ZNF143	chr9:140339708-140340117	GM12878	blood:	n/a	chr9:140340057-140340075

No.	Distal block	Cell Line	Cell type
1	chr9:140181490..140182008-chr9:140339716..140340298,2	MCF-7	breast:
2	chr9:140173193..140177984-chr9:140338841..140345205,7	K562	blood:
3	chr9:140195671..140196210-chr9:140339702..140340361,2	MCF-7	breast:
4	chr9:140189561..140190480-chr9:140339770..140340606,3	K562	blood:
5	chr9:140336000..140341073-chr9:140346212..140348839,4	MCF-7	breast:
6	chr9:140196649..140197437-chr9:140339458..140340157,2	MCF-7	breast:
7	chr9:140328603..140331524-chr9:140339859..140341815,2	MCF-7	breast:
8	chr9:140337612..140342127-chr9:140353441..140355924,4	K562	blood:
9	chr9:140189163..140189728-chr9:140339137..140339973,2	MCF-7	breast:
10	chr9:140189903..140198274-chr9:140327279..140342312,31	MCF-7	breast:
11	chr9:140189738..140190666-chr9:140339488..140340122,3	MCF-7	breast:
12	chr9:140193770..140200081-chr9:140338433..140344074,9	MCF-7	breast:
13	chr9:140116174..140118873-chr9:140338820..140340591,2	MCF-7	breast:
14	chr9:140317349..140318505-chr9:140339431..140340433,7	K562	blood:
15	chr9:140189492..140190310-chr9:140339405..140340198,3	MCF-7	breast:
16	chr9:140245725..140246694-chr9:140339428..140340337,3	MCF-7	breast:
17	chr9:140317389..140318271-chr9:140339648..140340812,5	MCF-7	breast:
18	chr9:140188855..140198797-chr9:140328049..140340935,26	K562	blood:
19	chr9:140335850..140343594-chr9:140351085..140357770,13	MCF-7	breast:
20	chr9:140320511..140322623-chr9:140338358..140341178,2	MCF-7	breast:
21	chr9:140309612..140312121-chr9:140339396..140342305,2	K562	blood:
22	chr9:140173193..140176574-chr9:140337442..140342182,4	K562	blood:
23	chr9:140317565..140318277-chr9:140339425..140340227,3	MCF-7	breast:
24	chr9:140339107..140341756-chr9:140342084..140345121,4	MCF-7	breast:

Variant related genes	Relation type
ENTPD8	TF binding region
ENSG00000165802	Chromatin interaction
ENSG00000260996	Chromatin interaction
ENSG00000187609	Chromatin interaction
ENSG00000188747	Chromatin interaction
ENSG00000198435	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11507679	1.00[MEX][hapmap]
rs11541259	1.00[MEX][hapmap]
rs12156648	1.00[MEX][hapmap]
rs12236403	1.00[MEX][hapmap]
rs28695269	1.00[AFR][1000 genomes]
rs9695196	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:59 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
3	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
4	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
6	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
7	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
8	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
9	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
10	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
11	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
12	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
13	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
14	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
15	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
16	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
17	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
18	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
19	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
20	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
21	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
22	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
23	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
24	nsv894588	chr9:139963091-140372570	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	295 gene(s)	inside rSNPs	diseases
25	nsv894606	chr9:140018138-140368860	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
26	nsv894607	chr9:140018138-140382705	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
27	nsv894608	chr9:140018138-140392494	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
28	nsv894609	chr9:140018138-140400275	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
29	nsv894610	chr9:140018138-140408904	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
30	nsv894626	chr9:140068342-140368860	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
31	nsv894627	chr9:140068342-140382705	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
32	nsv894628	chr9:140068342-140400275	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	269 gene(s)	inside rSNPs	diseases
33	nsv894638	chr9:140094605-140368860	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
34	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
35	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
36	esv1824250	chr9:140118448-140390615	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	230 gene(s)	inside rSNPs	diseases
37	nsv894645	chr9:140165584-140408904	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
38	esv1824017	chr9:140197784-140341751	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
39	esv2758205	chr9:140197784-140341751	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
40	esv2759721	chr9:140197784-140341751	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
41	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
42	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
43	nsv894653	chr9:140228092-140343189	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
44	nsv531602	chr9:140240417-140535223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	diseases
45	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
46	nsv894654	chr9:140243547-140382705	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
47	nsv894655	chr9:140243547-140392494	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
48	nsv1035524	chr9:140251014-140751633	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
49	nsv1053628	chr9:140260666-141005637	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
50	nsv534215	chr9:140286134-141008915	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7866456	PNPLA7	cis	lymphoblastoid	seeQTL

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140336200-140340000	Weak transcription	Lung	lung
2	chr9:140336200-140340000	Weak transcription	Pancreas	Pancrea
3	chr9:140336200-140342600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:140336200-140343000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:140336200-140347800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:140336400-140348200	Weak transcription	Right Atrium	heart
7	chr9:140336600-140340000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:140336600-140340000	Weak transcription	Colonic Mucosa	Colon
9	chr9:140336600-140343600	Weak transcription	Right Ventricle	heart
10	chr9:140336600-140348600	Weak transcription	Left Ventricle	heart
11	chr9:140336800-140340000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:140336800-140340000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:140336800-140343200	Weak transcription	Ovary	ovary
14	chr9:140336800-140343400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:140336800-140343600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:140336800-140343600	Weak transcription	Aorta	Aorta
17	chr9:140336800-140352400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:140337000-140340000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:140338200-140346600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:140339400-140340200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr9:140339400-140340200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:140339400-140340200	Enhancers	Fetal Intestine Small	intestine
23	chr9:140339400-140340400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:140339400-140340400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:140339400-140340600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:140339400-140340600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr9:140339400-140340600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:140339400-140340600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr9:140339400-140340600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr9:140339400-140340800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr9:140339400-140340800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr9:140339400-140340800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr9:140339400-140340800	Enhancers	Fetal Intestine Large	intestine
34	chr9:140339400-140340800	Enhancers	HSMMtube	muscle
35	chr9:140339400-140340800	Enhancers	NHEK	skin
36	chr9:140339400-140341200	Enhancers	K562	blood
37	chr9:140339400-140342200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:140339400-140342800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr9:140339600-140340000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:140339600-140340000	Enhancers	Duodenum Mucosa	Duodenum
41	chr9:140339600-140340000	Enhancers	Fetal Heart	heart
42	chr9:140339600-140340000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
43	chr9:140339600-140340200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:140339600-140340200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr9:140339600-140340200	Enhancers	Primary B cells from cord blood	blood
46	chr9:140339600-140340200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
47	chr9:140339600-140340200	Enhancers	Primary T cells from cord blood	blood
48	chr9:140339600-140340200	Enhancers	Placenta	Placenta
49	chr9:140339600-140340200	Enhancers	NHLF	lung
50	chr9:140339600-140340400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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