Variant report

Variant	rs7866629
Chromosome Location	chr9:15539893-15539894
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr9:15539885-15539969	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15538062..15540509-chr9:15552565..15554442,2	MCF-7	breast:

Variant related genes	Relation type
RNU6-246P	TF binding region
ENSG00000164989	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10738399	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10756673	0.84[AMR][1000 genomes]
rs10810397	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810416	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10810419	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10810422	0.80[EUR][1000 genomes]
rs11792937	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13301516	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs169342	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs183928	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1848582	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs192466	0.82[EUR][1000 genomes]
rs2457265	0.81[AMR][1000 genomes]
rs2457637	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2663300	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs276444	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs276447	0.85[AMR][1000 genomes]
rs276448	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs276449	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs276453	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs276454	0.82[EUR][1000 genomes]
rs276455	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2821545	0.85[EUR][1000 genomes]
rs3119699	0.84[EUR][1000 genomes]
rs3122702	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs432452	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs433849	0.84[EUR][1000 genomes]
rs442549	0.82[AMR][1000 genomes]
rs451878	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4740614	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6474930	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7031365	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7036875	0.80[EUR][1000 genomes]
rs7042475	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs770524	0.82[EUR][1000 genomes]
rs7851056	0.81[EUR][1000 genomes]
rs7851323	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7873152	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7875367	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9407624	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9650684	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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