Variant report

Variant	rs7866922
Chromosome Location	chr9:8719261-8719262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10122099	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10815926	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12375677	0.85[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1368979	0.83[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1434260	0.85[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1473822	0.92[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1821429	0.83[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs1865340	0.92[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877447	1.00[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.99[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1991931	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2053126	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4614053	0.86[EUR][1000 genomes]
rs4740959	0.86[EUR][1000 genomes]
rs6477327	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7866681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs906635	0.92[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs906636	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980404	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6474	chr9:8706602-8751414	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8704400-8731800	Weak transcription	Fetal Lung	lung
2	chr9:8710600-8733600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:8715400-8723000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:8715600-8720200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:8716200-8720200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:8716200-8732600	Weak transcription	Fetal Brain Female	brain
7	chr9:8716400-8719400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:8717000-8721000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:8717200-8721000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:8717400-8719600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:8717400-8719800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr9:8717400-8720200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:8717800-8720000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:8717800-8723400	Enhancers	Primary hematopoietic stem cells	blood
15	chr9:8718000-8721400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:8718000-8724600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr9:8718400-8733600	Weak transcription	Psoas Muscle	Psoas
18	chr9:8718600-8720200	Enhancers	Dnd41	blood
19	chr9:8718600-8721200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr9:8718800-8721000	Enhancers	Placenta Amnion	Placenta Amnion
21	chr9:8718800-8724400	Weak transcription	Ovary	ovary
22	chr9:8718800-8730800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr9:8718800-8732800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:8719000-8719400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:8719000-8719400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:8719000-8720000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:8719000-8720000	Weak transcription	HUVEC	blood vessel
28	chr9:8719000-8720200	Weak transcription	Brain Substantia Nigra	brain
29	chr9:8719000-8720600	Enhancers	Brain Anterior Caudate	brain
30	chr9:8719000-8720800	Weak transcription	Aorta	Aorta
31	chr9:8719000-8723800	Weak transcription	Brain Angular Gyrus	brain
32	chr9:8719000-8725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:8719000-8730800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:8719000-8733200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:8719000-8733200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:8719200-8719600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr9:8719200-8720200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:8719200-8722600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links