Variant report

Variant	rs6477327
Chromosome Location	chr9:8715969-8715970
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10977256	0.88[EUR][1000 genomes]
rs10977258	0.83[EUR][1000 genomes]
rs12375677	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1368979	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1434260	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1821429	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1877447	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1991931	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866681	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7866922	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7867247	0.82[EUR][1000 genomes]
rs906636	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs980404	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6474	chr9:8706602-8751414	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8699600-8717800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:8700800-8718000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:8704400-8731800	Weak transcription	Fetal Lung	lung
4	chr9:8706800-8718000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:8710600-8733600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:8712000-8716600	Weak transcription	Brain Angular Gyrus	brain
7	chr9:8712000-8718200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:8712200-8717800	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:8714800-8717400	Weak transcription	Brain Substantia Nigra	brain
10	chr9:8715000-8718600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr9:8715400-8723000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:8715600-8719000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr9:8715600-8720200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:8715800-8716000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:8715800-8716200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:8715800-8716200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:8715800-8716200	Enhancers	Fetal Brain Female	brain
18	chr9:8715800-8716400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr9:8715800-8716600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr9:8715800-8716600	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links