Variant report

Variant	rs7867247
Chromosome Location	chr9:8705964-8705965
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10977256	0.89[EUR][1000 genomes]
rs1821429	0.81[CEU][hapmap]
rs1991931	0.81[EUR][1000 genomes]
rs6477327	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7867247	RPL18A	cis	cerebellum	SCAN
rs7867247	INSL4	cis	parietal	SCAN
rs7867247	KANK2	trans	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8683000-8706000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:8693400-8706400	Weak transcription	Fetal Brain Male	brain
3	chr9:8693800-8706600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:8695200-8711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:8695400-8706800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:8696200-8706600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:8696800-8706000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:8698800-8706800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:8699600-8717800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:8700600-8706000	Weak transcription	Brain Anterior Caudate	brain
11	chr9:8700600-8706400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:8700600-8706400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:8700800-8718000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:8704000-8706600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:8704200-8706000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:8704200-8706800	Weak transcription	Ovary	ovary
17	chr9:8704400-8706200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr9:8704400-8706400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:8704400-8706600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:8704400-8706600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:8704400-8731800	Weak transcription	Fetal Lung	lung
22	chr9:8704600-8706800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:8705400-8706400	Weak transcription	Brain Substantia Nigra	brain
24	chr9:8705800-8706000	Enhancers	Brain Angular Gyrus	brain
25	chr9:8705800-8706800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr9:8705800-8707400	Enhancers	Fetal Kidney	kidney
27	chr9:8705800-8707800	Enhancers	Brain Hippocampus Middle	brain

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