Variant report

Variant	rs7867496
Chromosome Location	chr9:104253681-104253682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10819945	0.82[JPT][hapmap]
rs1113384	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1124148	1.00[ASN][1000 genomes]
rs12005425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12683273	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12684621	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs12684773	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12685862	1.00[ASN][1000 genomes]
rs12686025	0.83[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1407868	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs16920420	0.81[JPT][hapmap]
rs16920438	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16920439	0.91[JPT][hapmap];0.89[TSI][hapmap];0.82[ASN][1000 genomes]
rs16920447	0.82[JPT][hapmap]
rs16920479	0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs16920483	0.80[CHB][hapmap]
rs1929484	1.00[ASN][1000 genomes]
rs2150737	1.00[ASN][1000 genomes]
rs4097641	0.91[JPT][hapmap]
rs45572636	0.85[ASN][1000 genomes]
rs4743465	1.00[ASN][1000 genomes]
rs4743471	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs56357103	0.82[ASN][1000 genomes]
rs56682764	0.82[ASN][1000 genomes]
rs57053192	0.99[ASN][1000 genomes]
rs59111885	0.85[ASN][1000 genomes]
rs59837044	0.87[ASN][1000 genomes]
rs62575809	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68067101	0.81[ASN][1000 genomes]
rs72743378	0.96[ASN][1000 genomes]
rs72743387	0.99[ASN][1000 genomes]
rs72743390	0.98[ASN][1000 genomes]
rs72743392	0.97[ASN][1000 genomes]
rs72743393	0.82[ASN][1000 genomes]
rs72743394	0.97[ASN][1000 genomes]
rs72743396	0.97[ASN][1000 genomes]
rs72743397	1.00[ASN][1000 genomes]
rs72745315	0.81[ASN][1000 genomes]
rs72745318	0.83[ASN][1000 genomes]
rs7873168	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv3322010	chr9:104253631-104254779	ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7867496	LOC57653	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104253600-104253800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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