Variant report

Variant	rs7868536
Chromosome Location	chr9:97310166-97310167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97308118..97310790-chr9:97312751..97314524,2	MCF-7	breast:
2	chr9:97309308..97311468-chr9:97313942..97316861,2	MCF-7	breast:
3	chr9:97308189..97310804-chr9:97316799..97318658,2	K562	blood:

Variant related genes	Relation type
ENSG00000231806	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10123891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048510	0.84[EUR][1000 genomes]
rs10761335	0.84[EUR][1000 genomes]
rs10821357	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821361	0.82[ASN][1000 genomes]
rs10993237	0.81[EUR][1000 genomes]
rs10993243	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11789810	0.81[EUR][1000 genomes]
rs1754432	0.82[ASN][1000 genomes]
rs1754433	0.83[ASN][1000 genomes]
rs2406664	0.83[ASN][1000 genomes]
rs2406665	0.83[ASN][1000 genomes]
rs2406666	0.83[ASN][1000 genomes]
rs2772011	0.83[ASN][1000 genomes]
rs2772012	0.83[ASN][1000 genomes]
rs2945795	0.83[ASN][1000 genomes]
rs2945798	0.83[ASN][1000 genomes]
rs2987883	0.84[ASN][1000 genomes]
rs2993963	0.84[ASN][1000 genomes]
rs3802468	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs478604	0.83[ASN][1000 genomes]
rs498533	0.83[ASN][1000 genomes]
rs498635	0.83[ASN][1000 genomes]
rs501380	0.83[ASN][1000 genomes]
rs509022	0.84[ASN][1000 genomes]
rs540236	0.83[ASN][1000 genomes]
rs558753	0.83[ASN][1000 genomes]
rs564430	0.83[ASN][1000 genomes]
rs586140	0.84[ASN][1000 genomes]
rs597003	0.83[ASN][1000 genomes]
rs598386	0.83[ASN][1000 genomes]
rs599229	0.83[ASN][1000 genomes]
rs609901	0.83[ASN][1000 genomes]
rs612498	0.83[ASN][1000 genomes]
rs612952	0.83[ASN][1000 genomes]
rs62578748	0.80[EUR][1000 genomes]
rs642035	0.83[ASN][1000 genomes]
rs642477	0.83[ASN][1000 genomes]
rs642952	0.83[ASN][1000 genomes]
rs644237	0.83[ASN][1000 genomes]
rs645125	0.84[ASN][1000 genomes]
rs660911	0.83[ASN][1000 genomes]
rs693122	0.83[ASN][1000 genomes]
rs7024381	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7035309	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7035381	0.84[EUR][1000 genomes]
rs7039582	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525298	chr9:97289583-97312584	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv972786	chr9:97308737-97320211	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97296400-97314200	Weak transcription	Liver	Liver
2	chr9:97297200-97315000	Weak transcription	HepG2	liver
3	chr9:97302600-97315000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:97304800-97315200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:97308400-97312000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links