Variant report

Variant	rs7868670
Chromosome Location	chr9:117681352-117681353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117677998..117681403-chr9:117681907..117683952,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10817681	0.88[AFR][1000 genomes]
rs10982448	0.88[AFR][1000 genomes]
rs16931962	0.90[ASN][1000 genomes]
rs1885383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2181032	0.99[ASN][1000 genomes]
rs3181194	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3181349	0.86[AFR][1000 genomes]
rs3181350	0.85[AFR][1000 genomes]
rs3181357	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3181359	0.90[AFR][1000 genomes]
rs3181360	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3181362	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3789882	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3827818	0.92[ASN][1000 genomes]
rs4978612	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61024439	0.90[AFR][1000 genomes]
rs6478118	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7854103	0.90[AFR][1000 genomes]
rs7871914	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973351	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117667800-117683600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:117670800-117687200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:117672400-117681600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:117672800-117682000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:117672800-117682600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr9:117673200-117683000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr9:117673200-117692400	Weak transcription	Spleen	Spleen
8	chr9:117676000-117688000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:117677600-117684400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:117678000-117687000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:117679400-117681400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
12	chr9:117679600-117682200	Weak transcription	Fetal Lung	lung
13	chr9:117679600-117683600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr9:117679600-117687000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:117680200-117681800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:117680200-117682400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr9:117680200-117690400	Weak transcription	Fetal Thymus	thymus
18	chr9:117680400-117682000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:117680400-117682000	Weak transcription	Thymus	Thymus
20	chr9:117680400-117682200	Weak transcription	Primary B cells from cord blood	blood
21	chr9:117680400-117683800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:117680400-117683800	Weak transcription	Dnd41	blood
23	chr9:117680600-117681800	Weak transcription	Primary T cells from cord blood	blood
24	chr9:117680600-117681800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr9:117680600-117682600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr9:117680600-117688400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr9:117680800-117681600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr9:117680800-117689600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr9:117681000-117681800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr9:117681000-117683800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr9:117681200-117682000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr9:117681200-117682200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr9:117681200-117688200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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